Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb388910 Zea mays HOM05D003098 ORTHO05D003634 4.6e-61 237.7 115 100.0
Zm00001eb389010 Zea mays HOM05D003098 ORTHO05D003634 1.2e-53 213.0 108 93.5
Os06g0652550 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 2.1e-37 159.1 108 71.3
Nn8g40230 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.2e-24 116.7 94 59.6
Aqoxy7G03253 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.5e-24 116.3 97 57.7
MBI15_g07476_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 3.4e-24 115.2 88 63.6
TAR383G0043 Trochodendron aralioides HOM05D003098 ORTHO05D003634 3.4e-24 115.2 99 56.6
Nn2g12562 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.7e-23 112.8 100 56.0
PSO782G3246 Papaver somniferum HOM05D003098 ORTHO05D003634 1.7e-23 112.8 103 55.3
PSO063G3789 Papaver somniferum HOM05D003098 ORTHO05D003634 2.9e-23 112.1 103 55.3
CDE05G1295 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 6.5e-23 110.9 100 52.0
Os06g0154900 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 1.9e-22 109.4 100 56.0
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 1.9e-22 109.4 96 59.4
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 4.2e-22 108.2 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3688 Anthoceros agrestis HOM05D003098 ORTHO05D003634 7.2e-22 107.5 105 52.4
CDE02G0504 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 1.6e-21 106.3 95 51.6
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 3.5e-21 105.1 101 52.5
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 3.5e-21 105.1 102 51.0
ATR0580G062 Amborella trichopoda HOM05D003098 ORTHO05D003634 7.9e-21 104.0 101 55.4
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 1.8e-20 102.8 105 52.4
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-20 102.8 100 52.0
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-20 102.8 100 52.0
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.8e-20 102.8 100 52.0
Pp3c10_22920 Physcomitrium patens HOM05D003098 ORTHO05D003634 2.3e-20 102.4 105 51.4
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 5.1e-20 101.3 100 50.0
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 5.1e-20 101.3 100 52.0
Nitab4.5_0002495g0020 Nicotiana tabacum HOM05D003098 ORTHO05D003634 6.7e-20 100.9 100 50.0
SMO364G0643 Selaginella moellendorffii HOM05D003098 ORTHO05D003634 6.7e-20 100.9 105 49.5
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 8.7e-20 100.5 100 49.0
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 8.7e-20 100.5 100 49.0
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 8.7e-20 100.5 100 51.0
Lj1C810T1 Lonicera japonica HOM05D003098 ORTHO05D003634 8.7e-20 100.5 100 52.0
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 8.7e-20 100.5 105 49.5
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 1.1e-19 100.1 100 51.0
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 1.1e-19 100.1 100 51.0
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.1e-19 100.1 100 52.0
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 1.9e-19 99.4 100 46.0
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 1.9e-19 99.4 100 46.0
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 1.9e-19 99.4 100 46.0
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 1.9e-19 99.4 100 51.0
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.9e-19 99.4 100 51.0
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 2.5e-19 99.0 100 52.0
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 2.5e-19 99.0 100 49.0
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 2.5e-19 99.0 100 52.0
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 2.5e-19 99.0 100 48.0
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 2.5e-19 99.0 100 48.0
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 4.3e-19 98.2 100 50.0
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 4.3e-19 98.2 100 50.0
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 4.3e-19 98.2 100 51.0
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.3e-19 98.2 100 48.0
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 5.7e-19 97.8 100 50.0
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 5.7e-19 97.8 102 50.0
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 50.0
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 7.4e-19 97.4 106 48.1
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 7.4e-19 97.4 106 48.1
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 7.4e-19 97.4 105 47.6
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 7.4e-19 97.4 105 47.6
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 7.4e-19 97.4 105 47.6
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 50.0
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 49.0
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 50.0
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 50.0
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 7.4e-19 97.4 101 48.5
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 7.4e-19 97.4 100 50.0
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 9.7e-19 97.1 100 50.0
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 9.7e-19 97.1 106 48.1
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 9.7e-19 97.1 106 48.1
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 9.7e-19 97.1 100 50.0
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 9.7e-19 97.1 100 49.0
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 1.3e-18 96.7 105 47.6
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 1.3e-18 96.7 106 47.2
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 1.3e-18 96.7 106 48.1
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 1.3e-18 96.7 106 48.1
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 1.3e-18 96.7 106 47.2
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 1.3e-18 96.7 105 47.6
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 1.3e-18 96.7 100 50.0
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.3e-18 96.7 100 50.0
QL04p070292 Quercus lobata HOM05D003098 ORTHO05D003634 1.3e-18 96.7 100 50.0
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 49.0
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 45.0
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 48.0
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 49.0
Oeu020368.1 Olea europaea HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 48.0
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 49.0
Pp3c3_28300 Physcomitrium patens HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 52.0
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 49.0
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 49.0
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 1.6e-18 96.3 101 48.5
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 1.6e-18 96.3 100 48.0
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 2.2e-18 95.9 104 47.1
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 2.2e-18 95.9 106 47.2
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 2.2e-18 95.9 106 47.2
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 2.2e-18 95.9 100 50.0
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 2.2e-18 95.9 100 49.0
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 2.2e-18 95.9 100 49.0
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 2.2e-18 95.9 100 49.0
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 2.2e-18 95.9 90 53.3
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 2.2e-18 95.9 90 53.3
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 2.2e-18 95.9 100 49.0
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 2.8e-18 95.5 105 46.7
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 2.8e-18 95.5 105 46.7
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 2.8e-18 95.5 106 47.2
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 2.8e-18 95.5 98 50.0
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 2.8e-18 95.5 88 55.7
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 2.8e-18 95.5 100 50.0
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 2.8e-18 95.5 100 50.0
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 48.0
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 3.7e-18 95.1 105 46.7
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 49.0
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 48.0
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 50.0
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 50.0
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 3.7e-18 95.1 100 48.0
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 3.7e-18 95.1 105 46.7
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 4.8e-18 94.7 106 46.2
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 4.8e-18 94.7 105 46.7
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 4.8e-18 94.7 104 46.2
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 4.8e-18 94.7 100 48.0
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 6.3e-18 94.4 101 49.5
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 6.3e-18 94.4 100 49.0
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 8.2e-18 94.0 100 49.0
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 8.2e-18 94.0 100 49.0
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 8.2e-18 94.0 100 49.0
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 8.2e-18 94.0 100 49.0
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 8.2e-18 94.0 100 48.0
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 1.1e-17 93.6 98 49.0
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 1.1e-17 93.6 100 47.0
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 1.1e-17 93.6 95 49.5
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.4e-17 93.2 100 49.0
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.4e-17 93.2 100 49.0
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 1.8e-17 92.8 100 48.0
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 2.4e-17 92.4 101 45.5
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 2.4e-17 92.4 100 49.0
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 2.4e-17 92.4 100 49.0
CBR_g77957 Chara braunii HOM05D003098 ORTHO05D003634 3.1e-17 92.0 92 48.9
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 3.1e-17 92.0 105 49.5
CSS0004559 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 5.3e-17 91.3 90 51.1
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.3e-17 91.3 100 49.0
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 6.9e-17 90.9 100 47.0
HPP92_009664 Vanilla planifolia HOM05D003098 ORTHO05D003634 6.9e-17 90.9 90 51.1
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 9.0e-17 90.5 100 43.0
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 1.2e-16 90.1 101 43.6
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 1.2e-16 90.1 105 44.8
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 2.0e-16 89.4 102 44.1
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 2.0e-16 89.4 100 43.0
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 2.0e-16 89.4 100 47.0
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.0e-16 89.4 101 45.5
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 2.6e-16 89.0 101 42.6
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 2.6e-16 89.0 101 42.6
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 3.4e-16 88.6 101 42.6
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 3.4e-16 88.6 103 48.5
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 3.4e-16 88.6 88 54.5
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 2.9e-15 85.5 89 46.1
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 3.8e-15 85.1 100 45.0
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 8.5e-15 84.0 62 62.9
CBR_g5621 Chara braunii HOM05D003098 ORTHO05D003634 1.1e-14 83.6 97 44.3
Oeu001299.2 Olea europaea HOM05D003098 ORTHO05D003634 3.2e-14 82.0 72 55.6
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 1.6e-13 79.7 100 43.0
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 3.6e-13 78.6 82 52.4
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 4.6e-13 78.2 73 53.4
Cre26.g756897 Chlamydomonas reinhardtii HOM05D003098 ORTHO05D003634 2.3e-12 75.9 81 48.1
CDE10G1008 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 2.0e-11 72.8 83 48.2
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 9.7e-11 70.5 100 41.0
MCO16G477 Micromonas commoda HOM05D003098 ORTHO05D003634 1.5e-08 63.2 122 32.0
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 1.0e-07 60.5 73 42.5


User provided reference genes

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