Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 2.7e-100 368.6 181 100.0
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 7.9e-100 367.1 181 99.4
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 5.3e-96 354.4 200 90.0
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 2.0e-95 352.4 199 89.4
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 3.4e-95 351.7 200 89.5
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 1.2e-92 343.2 200 87.5
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 3.0e-83 312.0 200 79.0
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 6.7e-83 310.8 198 78.3
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 8.8e-83 310.5 198 78.3
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 5.7e-82 307.8 200 77.0
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 5.7e-82 307.8 200 78.0
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 5.7e-82 307.8 200 77.5
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 7.4e-82 307.4 200 77.0
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 7.4e-82 307.4 200 78.0
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 7.4e-82 307.4 200 78.0
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 1.3e-81 306.6 198 78.3
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.7e-81 306.2 195 79.0
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.7e-81 306.2 195 79.0
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 1.7e-81 306.2 200 77.0
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.2e-81 305.8 200 77.5
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 2.2e-81 305.8 200 76.5
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 2.8e-81 305.4 200 77.5
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 3.7e-81 305.1 200 77.0
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 4.8e-81 304.7 200 76.5
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 4.8e-81 304.7 200 77.0
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 6.3e-81 304.3 198 76.3
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 6.3e-81 304.3 200 76.0
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 8.2e-81 303.9 200 76.5
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 1.1e-80 303.5 200 76.5
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 1.1e-80 303.5 200 75.5
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 1.4e-80 303.1 200 76.5
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.4e-80 303.1 200 76.0
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 1.4e-80 303.1 200 76.0
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 1.4e-80 303.1 200 75.0
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.4e-80 302.4 205 75.1
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 2.4e-80 302.4 200 76.0
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 2.4e-80 302.4 198 75.8
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 3.1e-80 302.0 200 76.5
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 3.1e-80 302.0 200 76.5
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 3.1e-80 302.0 200 75.5
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 3.1e-80 302.0 200 75.5
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 5.3e-80 301.2 200 75.5
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 6.9e-80 300.8 200 75.0
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 6.9e-80 300.8 200 76.5
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 6.9e-80 300.8 200 76.5
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 6.9e-80 300.8 200 76.5
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 6.9e-80 300.8 200 77.0
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 9.1e-80 300.4 198 75.8
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 9.1e-80 300.4 200 77.0
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 9.1e-80 300.4 200 77.0
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 9.1e-80 300.4 200 76.5
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 9.1e-80 300.4 200 76.0
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 9.1e-80 300.4 200 76.0
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 1.2e-79 300.1 200 75.5
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.2e-79 300.1 198 75.8
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 1.2e-79 300.1 200 75.0
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 1.2e-79 300.1 200 76.5
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.2e-79 300.1 200 76.5
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 1.5e-79 299.7 200 75.0
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 2.0e-79 299.3 198 75.8
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 2.6e-79 298.9 198 74.7
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 2.6e-79 298.9 200 75.0
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 3.4e-79 298.5 200 75.5
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 3.4e-79 298.5 198 74.7
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 3.4e-79 298.5 198 74.7
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 3.4e-79 298.5 198 75.3
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 4.5e-79 298.1 200 75.5
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 4.5e-79 298.1 200 76.0
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 4.5e-79 298.1 200 74.5
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 1.0e-78 297.0 198 74.7
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 1.3e-78 296.6 195 76.9
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 1.7e-78 296.2 200 74.5
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 1.7e-78 296.2 195 76.4
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 2.2e-78 295.8 195 75.4
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 3.8e-78 295.0 200 74.0
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 6.5e-78 294.3 200 74.0
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 6.5e-78 294.3 200 74.0
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 6.5e-78 294.3 200 74.0
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 8.5e-78 293.9 195 76.9
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.1e-77 293.5 200 75.5
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.4e-77 293.1 200 73.5
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.9e-77 292.7 200 74.0
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 2.5e-77 292.4 200 73.0
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 3.2e-77 292.0 200 73.5
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 4.2e-77 291.6 195 74.4
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 4.2e-77 291.6 195 74.9
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 7.2e-77 290.8 200 73.0
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 7.2e-77 290.8 209 71.3
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 3.6e-76 288.5 195 74.4
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 3.6e-76 288.5 200 71.5
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 3.9e-75 285.0 198 72.2
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 6.7e-75 284.3 199 73.4
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 8.8e-75 283.9 195 73.3
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 1.5e-74 283.1 195 72.3
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 2.0e-74 282.7 201 70.6
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 4.4e-74 281.6 193 71.5
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 9.7e-74 280.4 241 61.8
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 1.3e-73 280.0 195 71.8
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 1.3e-73 280.0 201 69.2
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 1.3e-73 280.0 236 62.3
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 8.2e-73 277.3 175 77.1
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 5.3e-72 274.6 197 71.1
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 1.3e-70 270.0 198 68.7
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 1.3e-70 270.0 195 69.2
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 2.5e-69 265.8 201 67.7
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 5.5e-69 264.6 195 69.2
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 7.2e-69 264.2 198 67.7
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 7.2e-69 264.2 198 66.7
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 9.4e-69 263.8 198 67.2
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 1.2e-68 263.5 198 66.7
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 1.0e-67 260.4 257 57.2
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 2.3e-67 259.2 151 84.1
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 6.7e-67 257.7 150 84.7
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 6.7e-67 257.7 198 65.2
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 1.5e-66 256.5 150 83.3
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 2.0e-66 256.1 151 82.1
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 5.7e-66 254.6 150 82.0
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 1.7e-65 253.1 198 65.7
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 2.8e-65 252.3 170 72.9
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 3.7e-65 251.9 149 84.6
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 1.1e-64 250.4 150 83.3
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 1.4e-64 250.0 198 65.2
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 2.4e-64 249.2 150 81.3
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 9.1e-64 247.3 194 65.5
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 9.1e-64 247.3 194 65.5
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 9.1e-64 247.3 194 65.5
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 1.2e-63 246.9 194 64.9
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 1.2e-63 246.9 194 64.9
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 2.0e-63 246.1 194 64.9
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 2.0e-63 246.1 194 64.9
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 1.3e-62 243.4 194 64.4
Sabra02G0145400 Salix brachista HOM05D004276 ORTHO05D005126 1.5e-61 240.0 218 60.1
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 6.7e-59 231.1 198 59.1
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 2.6e-58 229.2 192 60.9
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 3.3e-58 228.8 198 59.6
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 4.1e-56 221.9 138 79.0
Lsat_1_v5_gn_2_67120 Lactuca sativa HOM05D004276 ORTHO05D005126 2.7e-55 219.2 181 64.6
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 2.9e-54 215.7 129 82.2
PRCOL_00001531 Prasinoderma coloniale HOM05D004276 ORTHO05D005126 1.0e-46 190.7 209 51.2
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 5.5e-45 184.9 155 56.1
AT1G26530 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 6.1e-44 181.4 198 52.5
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 1.8e-43 179.9 141 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 1.5e-42 176.8 118 71.2
Sed0023585 Sechium edule HOM05D004276 ORTHO05D005126 1.5e-42 176.8 177 55.4
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 7.0e-40 167.9 113 72.6
Glyma.19G251700 Glycine max HOM05D004276 ORTHO05D005126 2.9e-38 162.5 209 49.3
Gohir.A06G141040 Gossypium hirsutum HOM05D004276 ORTHO05D005126 2.8e-36 156.0 98 79.6
Cc00_g30190 Coffea canephora HOM05D004276 ORTHO05D005126 1.0e-35 154.1 94 80.9
Nitab4.5_0004748g0010 Nicotiana tabacum HOM05D004276 ORTHO05D005126 7.8e-31 137.9 93 74.2
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 1.7e-30 136.7 92 71.7
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 3.1e-27 125.9 60 95.0
RcHm_v2.0_Chr1g0326781 Rosa chinensis HOM05D004276 ORTHO05D005126 1.1e-21 107.5 67 80.6
RcHm_v2.0_Chr5g0018241 Rosa chinensis HOM05D004276 ORTHO05D005126 3.3e-21 105.9 67 79.1
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 1.2e-20 104.0 56 82.1
MBI18_g19490_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.1e-19 100.9 56 78.6
DCAR_005368 Daucus carota HOM05D004276 ORTHO05D005126 4.0e-19 99.0 74 63.5
MBI02_g45291_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.2e-18 97.4 79 60.8
QL08p061068 Quercus lobata HOM05D004276 ORTHO05D013412 2.6e-18 96.3 51 86.3
SHI12502 Sapria himalayana HOM05D004276 ORTHO05D005126 2.1e-15 86.7 107 49.5
SHI29225 Sapria himalayana HOM05D004276 ORTHO05D005126 1.2e-12 77.4 80 53.8
MBI17_g03297_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 2.0e-10 70.1 37 86.5
RcHm_v2.0_Chr4g0446551 Rosa chinensis HOM05D004276 ORTHO05D005126 2.0e-10 70.1 34 94.1
Actinidia10088 Actinidia chinensis HOM05D004276 ORTHO05D005126 4.4e-10 68.9 41 75.6
CDE11G0451 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 5.8e-10 68.6 41 73.2
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 5.4e-08 62.0 116 33.6
AL1G41100 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 7.1e-08 61.6 66 53.0
RcHm_v2.0_Chr3g0464711 Rosa chinensis HOM05D004276 ORTHO05D005126 2.7e-07 59.7 35 80.0
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 6.0e-07 58.5 139 29.5
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 7.8e-07 58.2 139 28.1
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.0e-06 57.8 136 29.4
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.3e-06 57.4 136 28.7
Hma1.2p1_0248F.1_g102040 Hydrangea macrophylla HOM05D001996 ORTHO05D002072 6.6e-06 55.1 29 72.4
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 6.6e-06 55.1 126 28.6
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 8.7e-06 54.7 136 27.2
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.7e-06 54.7 137 27.0


User provided reference genes

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