Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.0e-206 722.6 737 100.0
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.7e-79 301.6 212 72.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.8e-79 300.8 217 69.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.3e-79 299.7 212 70.8
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.1e-78 298.9 216 70.4
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-78 298.9 217 69.6
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.1e-78 297.4 218 69.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 4.1e-78 297.0 218 69.3
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 9.1e-78 295.8 214 69.6
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.2e-77 295.4 212 70.8
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.2e-77 295.4 218 69.7
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.0e-77 294.7 218 69.3
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.6e-77 294.3 213 69.5
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.5e-77 293.9 218 68.8
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 5.9e-77 293.1 218 68.3
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 5.9e-77 293.1 214 69.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 5.9e-77 293.1 212 70.3
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 5.9e-77 293.1 218 68.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 7.7e-77 292.7 218 68.3
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 7.7e-77 292.7 218 70.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.0e-76 292.4 215 68.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.0e-76 292.4 215 70.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.0e-76 292.4 220 68.6
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.3e-76 292.0 218 68.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.7e-76 291.6 212 70.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 2.2e-76 291.2 212 68.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 2.9e-76 290.8 209 70.3
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.9e-76 290.8 217 68.2
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.8e-76 290.4 208 70.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 5.0e-76 290.0 218 67.9
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 5.0e-76 290.0 213 69.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 5.0e-76 290.0 220 68.2
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 5.0e-76 290.0 208 70.2
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.5e-76 289.7 215 69.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 6.5e-76 289.7 208 70.2
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 6.5e-76 289.7 212 68.9
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 8.5e-76 289.3 212 70.3
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.1e-75 288.9 218 66.5
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.5e-75 288.5 209 69.9
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.5e-75 288.5 211 68.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.9e-75 288.1 210 70.0
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.9e-75 288.1 227 66.5
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.9e-75 288.1 214 67.8
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.9e-75 288.1 214 67.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.9e-75 288.1 210 69.0
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.5e-75 287.7 218 66.5
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 4.2e-75 287.0 211 69.2
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 5.5e-75 286.6 218 66.5
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 7.2e-75 286.2 219 66.7
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 9.4e-75 285.8 205 70.7
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.2e-74 285.4 222 68.0
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.2e-74 285.4 207 69.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.6e-74 285.0 214 67.3
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.6e-74 285.0 206 69.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.1e-74 284.6 212 67.5
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.7e-74 284.3 221 65.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.6e-74 283.9 208 69.7
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.6e-74 283.9 208 69.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 3.6e-74 283.9 209 68.4
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 3.6e-74 283.9 217 65.9
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 6.1e-74 283.1 219 66.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 6.1e-74 283.1 219 66.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 6.1e-74 283.1 215 66.0
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.0e-73 282.3 214 66.4
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-73 281.6 216 66.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.8e-73 281.6 210 68.1
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.8e-73 281.6 213 67.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.3e-73 281.2 218 65.6
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-73 280.8 216 66.2
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-73 280.8 216 66.2
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-73 280.8 216 66.2
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 3.0e-73 280.8 217 65.4
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 8.8e-73 279.3 209 67.5
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.8e-73 279.3 218 66.5
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.5e-72 278.5 202 70.3
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-72 277.3 216 65.7
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.4e-72 276.9 214 65.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 7.4e-72 276.2 209 67.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 9.7e-72 275.8 218 62.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 9.7e-72 275.8 211 67.8
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.3e-71 275.4 212 66.0
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 2.2e-71 274.6 212 65.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.7e-71 273.9 213 66.7
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 8.2e-71 272.7 201 69.7
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.1e-70 272.3 215 65.6
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.2e-69 268.9 198 69.7
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.0e-69 268.1 218 60.1
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.6e-69 267.7 192 71.4
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 5.9e-69 266.5 198 69.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 5.9e-69 266.5 195 68.7
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.3e-68 265.4 189 73.0
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.7e-68 265.0 215 63.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 9.4e-67 259.2 189 69.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.7e-66 257.7 180 71.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 4.0e-65 253.8 196 66.8
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.4e-64 250.4 251 56.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 4.4e-64 250.4 187 69.0
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.6e-61 241.9 195 62.6
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.0e-60 239.2 198 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.7e-60 238.4 208 56.7
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.0e-57 227.3 225 55.6
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.8e-56 222.6 200 59.0
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.7e-53 214.5 156 71.2
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.8e-52 210.7 149 71.8
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.5e-51 208.0 189 59.3
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 9.5e-51 206.1 183 60.1
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 2.0e-48 198.4 115 86.1
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.7e-47 195.3 171 62.0
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.8e-41 175.3 156 60.3
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.3e-31 142.5 212 39.2
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 6.8e-25 120.2 94 62.8
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.4e-24 117.9 79 75.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 6.4e-23 113.6 219 32.0
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 4.6e-21 107.5 72 77.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 7.3e-19 100.1 64 76.6
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 9.6e-19 99.8 79 62.0
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-17 95.5 106 51.9
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.2e-17 94.0 58 74.1
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.4e-16 91.3 76 60.5
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.4e-16 90.9 107 49.5
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.8e-15 87.8 56 73.2
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.1e-13 82.0 142 35.2
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.1e-13 82.0 142 35.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 7.8e-13 80.1 180 32.2
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.3e-12 78.6 72 54.2
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 5.1e-12 77.4 65 58.5
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 6.6e-12 77.0 168 32.1
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.6e-10 72.4 63 55.6
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 8.1e-10 70.1 52 61.5
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 9.0e-09 66.6 159 31.4
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.4e-06 57.4 36 75.0


User provided reference genes

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