Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 2.1e-211 738.8 389 100.0
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 2.0e-52 210.7 374 40.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.6e-49 199.9 121 87.6
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 4.5e-44 183.0 277 39.7
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 1.5e-42 177.9 406 34.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 8.0e-41 172.2 121 78.5
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 4.9e-30 136.3 119 54.6
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 1.4e-29 134.8 263 33.8
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 7.0e-29 132.5 156 44.9
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 9.2e-29 132.1 171 39.8
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 9.2e-29 132.1 171 39.8
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 9.2e-29 132.1 177 39.5
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 3.5e-28 130.2 111 50.5
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 4.6e-28 129.8 207 38.2
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 4.6e-28 129.8 202 36.6
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 5.9e-28 129.4 135 45.9
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 5.9e-28 129.4 188 39.9
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 5.9e-28 129.4 185 41.6
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 1.0e-27 128.6 202 36.1
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.3e-27 128.3 152 45.4
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 1.3e-27 128.3 111 53.2
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 2.3e-27 127.5 186 34.9
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 3.0e-27 127.1 107 50.5
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.0e-27 127.1 135 45.2
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 3.9e-27 126.7 167 39.5
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.9e-27 126.7 135 45.2
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 5.0e-27 126.3 108 48.1
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 6.6e-27 125.9 171 38.6
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 6.6e-27 125.9 112 47.3
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.1e-26 125.2 113 50.4
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 1.1e-26 125.2 120 48.3
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 1.1e-26 125.2 195 36.4
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.1e-26 125.2 119 46.2
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 1.5e-26 124.8 130 46.9
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 1.5e-26 124.8 168 38.7
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 1.9e-26 124.4 109 48.6
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 1.9e-26 124.4 112 48.2
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 2.5e-26 124.0 111 46.8
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 2.5e-26 124.0 111 46.8
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 2.5e-26 124.0 141 44.0
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.5e-26 124.0 147 38.8
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 2.5e-26 124.0 108 51.9
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 4.3e-26 123.2 116 48.3
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.3e-26 123.2 195 36.4
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.3e-26 123.2 195 35.9
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 4.3e-26 123.2 133 45.1
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 5.6e-26 122.9 115 45.2
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 5.6e-26 122.9 147 38.8
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 7.3e-26 122.5 192 35.9
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 7.3e-26 122.5 205 36.1
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 7.3e-26 122.5 107 46.7
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 7.3e-26 122.5 108 48.1
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 7.3e-26 122.5 111 48.6
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 9.5e-26 122.1 132 43.2
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 1.2e-25 121.7 176 36.4
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.2e-25 121.7 201 37.3
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.2e-25 121.7 195 35.4
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 1.2e-25 121.7 131 45.0
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.2e-25 121.7 122 45.9
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.6e-25 121.3 145 40.7
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 1.6e-25 121.3 104 50.0
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 1.6e-25 121.3 186 35.5
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 1.6e-25 121.3 102 51.0
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 2.1e-25 120.9 111 46.8
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 2.1e-25 120.9 132 43.2
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 2.1e-25 120.9 226 35.4
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 3.6e-25 120.2 123 48.8
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 3.6e-25 120.2 107 48.6
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.7e-25 119.8 213 34.7
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 4.7e-25 119.8 111 46.8
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.7e-25 119.8 147 38.8
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 4.7e-25 119.8 111 45.9
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 4.7e-25 119.8 118 46.6
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 6.2e-25 119.4 132 42.4
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 6.2e-25 119.4 170 38.8
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 6.2e-25 119.4 170 38.8
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 6.2e-25 119.4 161 41.0
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 6.2e-25 119.4 161 41.0
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 8.0e-25 119.0 110 45.5
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 8.0e-25 119.0 174 39.7
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 1.0e-24 118.6 197 36.5
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 1.4e-24 118.2 171 36.8
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 1.4e-24 118.2 111 45.9
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 1.4e-24 118.2 107 47.7
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 1.4e-24 118.2 111 49.5
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.4e-24 118.2 175 39.4
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.8e-24 117.9 132 41.7
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.8e-24 117.9 112 43.8
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 2.3e-24 117.5 163 37.4
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 2.3e-24 117.5 132 41.7
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 2.3e-24 117.5 113 44.2
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 3.1e-24 117.1 112 46.4
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 3.1e-24 117.1 112 46.4
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 3.1e-24 117.1 111 46.8
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 3.1e-24 117.1 179 36.3
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 4.0e-24 116.7 129 43.4
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 4.0e-24 116.7 132 41.7
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 4.0e-24 116.7 132 41.7
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 4.0e-24 116.7 132 41.7
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 4.0e-24 116.7 132 41.7
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.2e-24 116.3 159 34.6
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 6.8e-24 115.9 197 35.5
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 6.8e-24 115.9 163 38.0
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 6.8e-24 115.9 108 46.3
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.8e-24 115.9 159 34.6
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 6.8e-24 115.9 133 39.1
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 1.2e-23 115.2 181 38.1
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.2e-23 115.2 159 34.6
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-23 115.2 107 46.7
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-23 115.2 147 40.1
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 1.2e-23 115.2 161 38.5
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 1.5e-23 114.8 197 36.0
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 1.5e-23 114.8 115 41.7
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.0e-23 114.4 117 41.9
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 2.6e-23 114.0 131 41.2
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 2.6e-23 114.0 178 35.4
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-23 114.0 159 34.0
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 2.6e-23 114.0 111 45.0
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.6e-23 114.0 112 42.0
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 3.4e-23 113.6 162 34.6
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.4e-23 113.6 195 35.4
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 3.4e-23 113.6 132 40.9
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 3.4e-23 113.6 115 46.1
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 4.4e-23 113.2 169 39.1
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 4.4e-23 113.2 179 38.0
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 5.8e-23 112.8 131 37.4
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 7.5e-23 112.5 218 33.0
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 9.8e-23 112.1 198 35.9
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 9.8e-23 112.1 112 49.1
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 1.3e-22 111.7 169 37.3
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 1.7e-22 111.3 174 34.5
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.7e-22 111.3 149 36.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 1.7e-22 111.3 110 41.8
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 2.2e-22 110.9 140 36.4
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 2.9e-22 110.5 107 43.9
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 3.7e-22 110.2 149 36.9
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 4.9e-22 109.8 184 32.6
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.9e-22 109.8 138 38.4
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.4e-22 109.4 179 34.6
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 8.3e-22 109.0 107 41.1
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 1.1e-21 108.6 110 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 1.1e-21 108.6 116 44.0
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 1.4e-21 108.2 118 41.5
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 3.2e-21 107.1 125 40.0
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 5.4e-21 106.3 99 49.5
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 5.4e-21 106.3 137 35.8
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 7.0e-21 105.9 99 49.5
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 9.2e-21 105.5 112 43.8
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 1.2e-20 105.1 208 32.2
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.5e-20 103.6 112 40.2
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 3.5e-20 103.6 187 34.2
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 4.6e-20 103.2 131 38.2
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 2.3e-19 100.9 139 35.3
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 5.0e-19 99.8 105 45.7
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.1e-18 98.6 98 42.9
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.1e-18 98.6 125 42.4
Zm00001eb113630 Zea mays HOM05D000870 ORTHO05D003935 1.9e-18 97.8 77 70.1
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 5.6e-18 96.3 96 45.8
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 7.3e-18 95.9 231 29.9
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.8e-17 94.0 103 41.7
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 6.8e-16 89.4 96 40.6
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 8.9e-16 89.0 97 39.2
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 1.2e-15 88.6 94 41.5
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 1.2e-15 88.6 159 30.8
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 6.4e-14 82.8 76 44.7
Zm00001eb333320 Zea mays HOM05D000870 ORTHO05D003935 1.0e-11 75.5 39 94.9
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 6.6e-11 72.8 124 32.3
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 8.6e-11 72.4 47 61.7
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 4.3e-10 70.1 114 31.6
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 4.3e-10 70.1 88 31.8
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 2.1e-09 67.8 84 29.8
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 8.1e-09 65.9 126 29.4
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.1e-08 63.9 67 37.3
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 5.2e-08 63.2 119 26.9
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 5.2e-08 63.2 58 50.0
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 8.9e-08 62.4 58 50.0
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 8.9e-08 62.4 72 38.9
Cre12.g551200 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.6e-07 60.8 86 34.9
Cre06.g269601 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 5.8e-07 59.7 73 37.0
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 7.6e-07 59.3 45 53.3
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.9e-06 57.4 42 54.8
Ah.08g221090 Amaranthus hybridus HOM05D003809 ORTHO05D003935 4.9e-06 56.6 61 39.3
Cre09.g394547 Chlamydomonas reinhardtii HOM05D020634 ORTHO05D003935 6.4e-06 56.2 99 30.3


User provided reference genes

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