Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 0.0e+00 1334.7 662 100.0
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 8.4e-208 727.6 530 67.9
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.5e-201 706.8 497 68.0
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 4.9e-200 701.8 533 65.9
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 6.4e-200 701.4 498 67.9
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 8.4e-200 701.0 528 65.5
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 2.1e-198 696.4 521 65.6
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 2.3e-197 693.0 530 64.3
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 3.0e-197 692.6 532 65.8
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 8.7e-197 691.0 522 64.8
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 1.1e-196 690.6 524 64.9
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 1.5e-196 690.3 526 64.4
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 2.5e-196 689.5 524 64.1
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 2.5e-196 689.5 526 64.1
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 3.3e-196 689.1 514 65.4
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 5.6e-196 688.3 498 66.5
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 9.6e-196 687.6 524 62.8
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 1.3e-195 687.2 521 63.9
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 2.8e-195 686.0 520 64.6
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 3.7e-195 685.6 534 63.3
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 8.2e-195 684.5 522 64.6
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 1.1e-194 684.1 524 62.4
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 1.8e-194 683.3 524 64.3
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 2.4e-194 682.9 544 62.3
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 3.1e-194 682.6 528 63.8
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 6.9e-194 681.4 528 63.8
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 9.0e-194 681.0 534 62.4
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 1.2e-193 680.6 522 64.2
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 1.5e-193 680.2 481 67.6
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.0e-193 679.9 481 67.6
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 4.5e-193 678.7 524 63.7
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 7.6e-193 677.9 481 66.9
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 7.6e-193 677.9 487 66.7
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 7.6e-193 677.9 481 66.9
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 7.6e-193 677.9 506 63.8
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 1.3e-192 677.2 503 65.2
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 1.7e-192 676.8 529 63.5
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 6.5e-192 674.9 496 65.9
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 8.4e-192 674.5 514 65.0
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 8.4e-192 674.5 524 63.9
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.1e-191 674.1 526 64.6
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 1.4e-191 673.7 530 62.8
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 1.9e-191 673.3 530 63.8
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 4.2e-191 672.2 530 62.6
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.5e-191 671.8 481 67.2
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 7.1e-191 671.4 501 64.7
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 7.1e-191 671.4 526 64.4
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 9.3e-191 671.0 501 66.1
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 9.3e-191 671.0 498 65.3
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 1.6e-190 670.2 504 66.9
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 2.7e-190 669.5 501 64.3
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 4.6e-190 668.7 501 64.5
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 4.6e-190 668.7 501 64.5
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 4.6e-190 668.7 501 64.5
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.6e-190 668.7 528 62.5
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.3e-189 667.2 514 64.6
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.8e-189 666.8 529 63.5
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.8e-189 666.8 514 64.6
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 3.9e-189 665.6 523 63.7
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.1e-189 665.2 523 62.1
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 5.1e-189 665.2 470 67.7
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 6.7e-189 664.8 523 62.9
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 8.7e-189 664.5 544 60.7
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.1e-188 664.1 514 64.0
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 1.9e-188 663.3 501 64.3
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 2.5e-188 662.9 532 61.1
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 3.3e-188 662.5 514 64.8
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 3.3e-188 662.5 514 64.8
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 3.3e-188 662.5 514 64.8
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 4.3e-188 662.1 501 64.3
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 5.7e-188 661.8 501 65.3
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 5.7e-188 661.8 528 62.3
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 5.7e-188 661.8 528 61.6
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 7.4e-188 661.4 525 63.0
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 7.4e-188 661.4 489 65.2
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 9.7e-188 661.0 514 64.2
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.7e-188 661.0 510 62.7
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-187 660.6 514 64.4
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 2.8e-187 659.4 513 64.1
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 6.3e-187 658.3 514 64.2
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.1e-186 657.5 510 62.9
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 2.4e-186 656.4 514 63.6
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.2e-185 654.1 577 58.9
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 1.5e-185 653.7 521 62.8
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 2.0e-185 653.3 496 64.7
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 3.8e-184 649.0 539 60.5
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 7.2e-183 644.8 516 62.0
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 1.6e-182 643.7 531 58.9
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 2.1e-182 643.3 457 66.3
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 1.8e-181 640.2 555 59.8
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 2.3e-181 639.8 502 62.5
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 8.8e-181 637.9 548 58.0
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 2.0e-180 636.7 488 63.7
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 5.7e-180 635.2 527 60.5
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 6.3e-179 631.7 541 60.8
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 1.3e-176 624.0 546 59.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 3.6e-174 615.9 525 59.8
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 9.7e-172 607.8 531 56.7
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 4.1e-170 602.4 530 58.1
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.0e-168 597.8 496 57.9
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 6.5e-168 595.1 464 63.6
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 9.7e-164 581.3 651 49.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 6.3e-163 578.6 488 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 5.9e-161 572.0 511 56.2
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 1.9e-159 567.0 491 58.2
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 5.5e-151 538.9 556 52.9
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 5.5e-151 538.9 478 55.2
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 2.3e-149 533.5 433 61.4
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 5.9e-145 518.8 371 68.5
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 6.1e-142 508.8 274 90.9
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 8.9e-141 505.0 349 70.8
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 8.9e-133 478.4 410 59.8
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 5.4e-130 469.2 407 59.2
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 1.3e-115 421.4 410 54.6
GSVIVG01029733001 Vitis vinifera HOM05D003620 ORTHO05D004261 3.9e-112 409.8 281 71.2
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 4.8e-102 376.3 505 43.6
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 2.0e-100 370.9 568 40.7
Lj5C243G7 Lonicera japonica HOM05D003620 ORTHO05D004261 1.7e-99 367.9 396 50.3
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 6.4e-91 339.3 221 74.2
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 8.7e-88 328.9 309 54.0
Zm00001eb011090 Zea mays HOM05D003620 ORTHO05D004261 2.7e-81 307.4 155 98.1
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 2.9e-75 287.3 334 50.0
Sp7g23980 Schrenkiella parvula HOM05D003620 ORTHO05D004261 1.6e-65 255.0 240 55.0
Oeu047370.1 Olea europaea HOM05D003620 ORTHO05D004261 8.8e-64 249.2 256 51.2
Zm00001eb141090 Zea mays HOM05D003620 ORTHO05D004261 4.1e-61 240.4 124 94.4
CBR_g4360 Chara braunii HOM05D003620 ORTHO05D004261 1.5e-60 238.4 254 48.0
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 3.2e-58 230.7 210 57.1
Oeu047369.1 Olea europaea HOM05D003620 ORTHO05D004261 2.6e-52 211.1 129 76.0
Gohir.A12G013866 Gossypium hirsutum HOM05D003620 ORTHO05D004261 2.7e-49 201.1 195 50.3
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 1.0e-48 199.1 172 58.1
SalBow5G0451 Salvia bowleyana HOM05D003620 ORTHO05D004261 2.3e-48 198.0 129 76.0
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 5.7e-47 193.4 126 70.6
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 4.8e-46 190.3 149 61.7
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 2.4e-45 188.0 123 72.4
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 5.3e-45 186.8 123 72.4
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 5.0e-43 180.3 303 37.6
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 3.0e-40 171.0 121 66.9
Glyma.03G071101 Glycine max HOM05D003620 ORTHO05D004261 9.8e-39 166.0 113 69.9
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 2.2e-38 164.9 108 70.4
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 2.8e-38 164.5 149 57.0
Haze_10769 Corylus avellana HOM05D003620 ORTHO05D004261 4.8e-38 163.7 112 69.6
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 2.4e-37 161.4 136 58.8
arahy.Tifrunner.gnm1.ann1.4105RR Arachis hypogaea HOM05D003620 ORTHO05D004261 5.2e-32 143.7 157 49.0
arahy.Tifrunner.gnm1.ann1.XM8XEN Arachis hypogaea HOM05D003620 ORTHO05D004261 8.8e-32 142.9 159 48.4
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.2e-31 142.5 169 47.9
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 2.6e-31 141.4 155 47.7
Dinv24229 Davidia involucrata HOM05D003620 ORTHO05D004261 5.7e-31 140.2 102 58.8
Migut.B00642 Erythranthe guttata HOM05D003620 ORTHO05D004261 2.2e-30 138.3 146 47.3
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 1.2e-28 132.5 91 65.9
GSVIVG01029735001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.8e-21 108.6 119 48.7
arahy.Tifrunner.gnm1.ann1.F2S38R Arachis hypogaea HOM05D003620 ORTHO05D004261 1.2e-17 95.9 59 72.9
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 3.6e-17 94.4 208 29.3
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 6.2e-17 93.6 58 74.1
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 6.2e-17 93.6 190 37.9
SEGI_27738 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 2.0e-15 88.6 113 39.8
GSVIVG01038340001 Vitis vinifera HOM05D003620 ORTHO05D004261 2.2e-14 85.1 57 64.9
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 2.9e-14 84.7 122 36.1
CsaV3_6G003040 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.4e-13 82.4 73 54.8
HanXRQChr04g0126841 Helianthus annuus HOM05D003620 ORTHO05D004261 3.0e-11 74.7 61 54.1
arahy.Tifrunner.gnm1.ann1.3Q8P58 Arachis hypogaea HOM05D003620 ORTHO05D004261 3.9e-11 74.3 57 61.4
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 5.0e-11 73.9 116 33.6
Haze_10767 Corylus avellana HOM05D003620 ORTHO05D004261 3.3e-10 71.2 91 45.1
Haze_10763 Corylus avellana HOM05D003620 ORTHO05D004261 4.3e-10 70.9 91 42.9
QL08p057600 Quercus lobata HOM05D003620 ORTHO05D004261 5.6e-10 70.5 90 44.4
CsaV3_6G003050 Cucumis sativus L. HOM05D003620 ORTHO05D004261 8.1e-09 66.6 73 50.7
Hund22189 Selenicereus undatus HOM05D003620 ORTHO05D004261 2.3e-08 65.1 49 63.3
BcaC07g37664 Brassica carinata HOM05D003620 ORTHO05D004261 4.0e-08 64.3 64 50.0
C09p20230 Brassica napus HOM05D003620 ORTHO05D004261 4.0e-08 64.3 37 75.7
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 2.6e-07 61.6 76 46.1
MELO3C026793.2 Cucumis melo HOM05D003620 ORTHO05D004261 3.4e-07 61.2 34 73.5
C07p07750 Brassica napus HOM05D003620 ORTHO05D004261 4.4e-07 60.8 37 73.0
SEGI_17560 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 4.4e-07 60.8 42 66.7
Cpa.g.sc2.53 Carica papaya HOM05D003620 ORTHO05D004261 9.8e-07 59.7 100 41.0


User provided reference genes

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