Gene: AT4G25970
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G25970
- Transcript Identifier AT4G25970.1
- Gene Type Coding gene
- Location Chr4 : 13184240-13189139 : positive
Gene Family Information
- ID HOM05D003620
- #Genes/#Species 189/94
- Phylogenetic origin
- ID ORTHO05D004261
- #Genes/#Species 185/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G25970.1
- symbol PSD3
- uniprot A4GNA8
Descriptions
- Description phosphatidylserine decarboxylase 3
- Computational description phosphatidylserine decarboxylase 3 (PSD3); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 2 (TAIR:AT5G57190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016540 | IEA | GOA Database | protein autoprocessing | |
GO:0008654 | IEA | GOA Database | phospholipid biosynthetic process | |
GO:0008654 | IEA | InterPro | phospholipid biosynthetic process | |
GO:0006629 | IEA | GOA Database | lipid metabolic process | |
GO:0006646 | IBA IEA | Gene Ontology | phosphatidylethanolamine biosynthetic process | 1 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005509 | IEA | Gene Ontology | calcium ion binding | |
GO:0005509 | IEA | InterPro | calcium ion binding | |
GO:0004609 | IEA | GOA Database | phosphatidylserine decarboxylase activity | |
GO:0004609 | IDA, IGI IBA | Gene Ontology | phosphatidylserine decarboxylase activity | 1 2 |
GO:0004609 | IEA | InterPro | phosphatidylserine decarboxylase activity | |
GO:0016829 | IEA | GOA Database | lyase activity | |
GO:0016831 | IEA | GOA Database | carboxy-lyase activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005783 | IEA | GOA Database | endoplasmic reticulum | |
GO:0005783 | IDA | Gene Ontology | endoplasmic reticulum | 2 |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0005789 | IEA | GOA Database | endoplasmic reticulum membrane | |
GO:0005829 | HDA | Gene Ontology | cytosol | 3 |
GO:0005737 | ISM | Gene Ontology | cytoplasm |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
5.2.4.2.1 | Lipid metabolism.glycerolipid biosynthesis.phosphatidylethanolamine.extramitochondrial phosphatidylserine decarboxylation pathway.phosphatidylserine decarboxylase |