Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.5e-239 831.2 428 100.0
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.4e-166 590.1 368 82.1
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.9e-144 516.5 405 67.7
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 4.7e-143 511.9 410 63.4
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.8e-142 510.0 414 62.8
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 2.3e-142 509.6 409 63.3
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.2e-141 507.3 409 62.6
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 3.4e-141 505.8 409 62.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 3.4e-141 505.8 409 62.1
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 9.8e-141 504.2 409 62.6
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.3e-140 503.8 417 62.1
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.2e-140 503.1 415 62.7
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 3.7e-140 502.3 407 61.2
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.4e-139 498.4 413 60.0
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 5.4e-139 498.4 407 60.9
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 7.0e-139 498.0 408 63.5
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 9.1e-139 497.7 409 60.6
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.2e-138 497.3 409 62.3
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.0e-138 496.5 411 61.6
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.0e-138 496.5 412 60.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.0e-138 496.5 420 60.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.9e-138 495.0 405 61.2
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 5.9e-138 495.0 413 60.3
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.0e-137 494.2 411 62.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.7e-137 493.4 414 59.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 2.3e-137 493.0 410 62.0
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 2.9e-137 492.7 409 61.9
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.9e-137 492.7 411 60.3
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.9e-137 492.7 418 59.1
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 5.0e-137 491.9 413 60.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 8.6e-137 491.1 408 60.0
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 8.6e-137 491.1 408 61.0
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 8.6e-137 491.1 408 59.3
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.5e-136 489.6 422 60.2
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 2.5e-136 489.6 422 60.2
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 4.2e-136 488.8 403 61.8
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 7.2e-136 488.0 412 58.5
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 9.5e-136 487.6 406 60.3
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.2e-135 487.3 407 57.5
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 2.1e-135 486.5 408 60.3
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 2.1e-135 486.5 405 61.2
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 8.0e-135 484.6 403 60.8
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 2.3e-134 483.0 414 57.5
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.3e-134 483.0 405 63.0
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 2.3e-134 483.0 414 59.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 3.0e-134 482.6 413 60.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.5e-133 480.3 408 58.6
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.5e-133 480.3 408 58.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.0e-133 479.9 406 58.6
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 2.6e-133 479.6 415 59.0
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 4.4e-133 478.8 408 58.3
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 9.8e-133 477.6 411 58.9
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.3e-132 477.2 413 61.5
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.3e-132 477.2 415 59.3
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 1.3e-132 477.2 415 59.5
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.2e-132 476.5 406 59.9
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.7e-132 475.7 412 57.3
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.4e-131 473.8 422 57.6
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 5.4e-131 471.9 423 57.4
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 9.2e-131 471.1 417 58.0
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.2e-130 470.7 417 58.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.2e-130 470.7 415 57.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 2.0e-130 469.9 415 58.3
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 2.7e-130 469.5 411 58.9
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.5e-128 463.8 415 59.0
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 4.3e-128 462.2 409 58.7
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 9.5e-128 461.1 413 57.6
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.2e-127 460.7 417 56.4
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 8.0e-127 458.0 413 57.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.6e-125 453.0 454 53.7
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 2.6e-125 453.0 421 56.5
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 3.2e-123 446.0 416 55.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.0e-123 444.9 406 56.7
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 4.6e-122 442.2 402 56.5
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 6.0e-122 441.8 354 62.7
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 8.6e-121 438.0 414 56.3
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.6e-120 435.3 325 69.2
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.5e-117 427.2 429 52.0
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 3.4e-117 426.0 388 61.9
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.4e-117 425.6 405 54.1
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.9e-115 420.2 403 55.3
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.3e-113 413.3 423 52.2
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.0e-113 412.9 358 58.1
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.6e-113 411.4 408 53.4
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.9e-112 410.2 412 52.7
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 2.5e-112 409.8 358 57.8
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.4e-110 404.1 406 52.0
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.2e-109 401.0 409 52.1
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.9e-108 396.4 429 49.0
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.7e-108 396.0 428 49.8
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.1e-105 385.6 353 55.8
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.6e-105 384.8 353 55.8
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 4.3e-104 382.5 416 51.0
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.1e-103 380.2 353 55.2
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.1e-98 363.6 409 48.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 7.1e-91 338.6 348 52.9
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.7e-89 334.0 320 55.0
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 3.6e-87 326.2 282 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.1e-83 314.7 345 49.3
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 1.5e-80 304.3 153 97.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 5.8e-77 292.4 501 37.7
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 7.1e-75 285.4 164 88.4
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 4.8e-71 272.7 469 38.2
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.0e-65 255.0 408 39.2
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 2.8e-63 246.9 206 60.2
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.2e-61 241.5 206 61.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.8e-57 227.6 200 59.0
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.8e-57 227.6 422 35.8
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 3.7e-47 193.4 242 46.3
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 8.8e-41 172.2 201 44.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 9.7e-40 168.7 203 42.9
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 9.1e-38 162.2 213 40.8
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 7.2e-35 152.5 162 48.1
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-28 132.1 130 53.1
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.5e-28 129.0 119 54.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.0e-25 122.1 102 62.7
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.6e-12 76.3 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.1e-11 75.5 76 53.9
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.8e-09 68.2 81 51.9
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.2e-07 61.2 54 51.9


User provided reference genes

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