Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 5.9e-243 844.0 485 100.0
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 7.0e-220 767.3 486 89.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 3.4e-158 562.4 486 72.4
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 3.7e-136 489.2 474 60.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 5.3e-135 485.3 475 56.8
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.6e-134 483.0 479 60.1
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 5.9e-134 481.9 391 65.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.0e-133 481.1 396 63.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.7e-133 480.3 391 65.2
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.8e-133 479.2 384 65.4
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.1e-132 477.6 384 64.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.4e-132 477.2 385 63.9
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.4e-132 477.2 478 57.1
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.9e-132 476.9 389 63.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.2e-132 476.1 385 64.4
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.5e-132 475.3 483 58.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.2e-132 474.9 475 56.8
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 7.2e-132 474.9 390 64.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-131 473.8 488 58.2
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.6e-131 473.8 492 59.3
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 6.1e-131 471.9 392 62.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.0e-130 471.1 391 65.2
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.4e-130 470.7 392 64.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.8e-130 470.3 488 55.7
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.8e-130 470.3 392 64.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.7e-130 468.4 392 62.8
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 8.8e-130 468.0 493 55.0
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.1e-129 467.6 385 64.2
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.5e-129 467.2 388 63.7
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.5e-129 467.2 391 63.4
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.3e-129 466.1 384 65.4
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.4e-129 465.7 475 54.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.3e-128 464.2 399 63.4
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.8e-128 463.0 390 63.3
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.8e-128 462.2 392 62.0
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 8.2e-128 461.5 394 63.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.1e-127 461.1 388 62.4
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.4e-127 460.7 489 52.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 4.1e-127 459.1 385 62.1
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 4.1e-127 459.1 382 63.1
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 7.0e-127 458.4 387 62.8
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.2e-126 457.6 387 62.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.2e-126 457.6 485 55.5
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.6e-126 457.2 386 61.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.2e-125 453.4 432 57.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.2e-125 453.4 385 62.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.8e-125 452.6 391 60.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.8e-125 452.6 399 61.4
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 5.0e-125 452.2 391 62.1
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.1e-124 451.1 387 60.7
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.5e-124 450.7 386 61.7
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.5e-124 450.7 383 62.4
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.9e-124 450.3 482 56.4
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 3.2e-124 449.5 384 61.5
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 4.2e-124 449.1 481 55.1
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 5.5e-124 448.7 499 52.5
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.2e-124 448.4 479 55.1
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 7.2e-124 448.4 495 52.3
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 9.4e-124 448.0 493 53.3
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.1e-123 446.8 473 54.1
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.6e-123 446.0 408 60.8
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.7e-123 445.7 477 54.7
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.7e-123 445.7 488 53.7
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.0e-122 444.5 383 63.2
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.4e-122 444.1 387 60.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.8e-122 443.7 475 54.7
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 4.0e-122 442.6 387 60.2
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 5.2e-122 442.2 380 60.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.8e-122 441.4 479 54.7
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-121 441.0 471 53.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-121 441.0 477 54.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.5e-121 440.7 389 61.7
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.0e-121 440.3 391 58.1
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.3e-120 437.6 387 60.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.7e-120 437.2 383 61.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.7e-120 436.0 390 59.2
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.4e-119 434.1 479 57.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.8e-119 433.7 392 61.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.8e-119 433.7 383 58.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.4e-119 433.3 387 59.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.4e-119 433.3 387 59.9
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 5.3e-119 432.2 510 52.0
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 7.0e-119 431.8 393 60.1
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.2e-118 431.0 482 55.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.6e-118 430.6 395 58.2
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.6e-118 430.6 383 58.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.5e-118 429.1 474 53.6
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.5e-118 429.1 385 61.0
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 4.5e-118 429.1 489 53.2
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 7.7e-118 428.3 385 60.8
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.2e-117 426.8 386 59.8
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 3.8e-117 426.0 385 59.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 3.8e-117 426.0 385 59.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 3.8e-117 426.0 389 59.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.9e-116 423.7 347 63.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-116 423.3 472 55.3
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 9.4e-116 421.4 385 57.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 9.4e-116 421.4 386 59.3
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.2e-115 421.0 473 53.7
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.1e-115 420.2 399 58.4
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.1e-115 420.2 488 50.2
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.7e-115 419.9 393 59.0
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.3e-114 416.8 478 51.5
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.2e-113 414.5 392 56.4
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.0e-113 413.7 399 57.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.0e-113 413.7 393 58.5
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.4e-113 412.9 388 57.2
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 5.7e-113 412.1 384 57.6
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.3e-112 411.0 390 57.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.7e-112 409.5 482 50.6
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.3e-112 408.7 475 53.1
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 8.3e-112 408.3 479 51.8
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 8.3e-112 408.3 488 49.0
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.8e-111 407.1 479 51.6
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.1e-111 406.4 310 67.1
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 4.1e-111 406.0 477 51.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.0e-110 403.7 389 56.8
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.0e-109 401.4 389 56.6
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 2.3e-109 400.2 389 55.5
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.9e-109 399.8 477 51.6
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.0e-109 399.1 392 55.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 9.5e-108 394.8 382 56.3
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 4.7e-107 392.5 425 53.6
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.1e-107 392.1 384 55.2
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 6.1e-107 392.1 330 61.5
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 8.0e-107 391.7 330 60.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 8.0e-107 391.7 384 55.7
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.0e-106 389.8 401 54.9
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 3.4e-105 386.3 484 48.6
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.4e-105 386.0 499 48.9
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.4e-103 380.2 392 53.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.4e-103 380.2 472 49.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 4.1e-103 379.4 477 47.8
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 5.4e-103 379.0 470 51.3
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 5.4e-103 379.0 386 52.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 9.2e-103 378.3 472 48.9
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-102 377.9 389 54.5
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.3e-101 373.6 387 54.5
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.5e-100 370.9 465 48.2
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.6e-99 367.5 385 52.7
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.6e-99 367.5 284 63.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.6e-99 366.3 390 52.6
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 6.1e-99 365.5 376 54.3
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-98 364.0 398 52.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.0e-95 352.1 382 51.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 7.0e-95 352.1 382 51.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.2e-94 351.3 407 55.8
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 8.0e-91 338.6 278 63.3
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.6e-83 314.3 387 46.0
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-80 304.7 268 62.3
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.1e-68 265.0 240 55.8
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.5e-65 254.6 194 70.1
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 9.9e-57 225.3 451 36.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.3e-56 224.9 240 48.8
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 9.6e-52 208.8 193 59.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.1e-47 195.3 125 80.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.1e-47 195.3 125 80.0
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 4.5e-41 173.3 195 46.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.2e-40 171.0 144 61.8
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.7e-37 159.1 134 64.9
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.5e-36 157.5 340 36.5
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.2e-35 152.5 129 64.3
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 4.1e-34 150.2 143 59.4
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 5.3e-34 149.8 110 68.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.0e-32 145.6 127 61.4
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 5.0e-32 143.3 118 61.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.4e-26 124.4 100 61.0
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.6e-20 104.4 100 57.0
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 9.7e-20 102.4 405 26.7
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 4.1e-18 97.1 316 28.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.9e-13 80.5 71 56.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 4.8e-11 73.6 48 81.2
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.9e-09 66.6 253 29.2
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-07 61.6 107 44.9
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 1.9e-07 61.6 71 49.3


User provided reference genes

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