Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.6e-149 532.7 265 100.0
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 1.5e-99 366.7 236 77.1
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 8.3e-82 307.8 234 61.5
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.4e-81 307.0 227 63.4
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.9e-81 306.6 227 63.4
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.2e-81 305.8 228 63.6
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 5.4e-81 305.1 228 62.7
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 9.2e-81 304.3 224 65.6
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 2.0e-80 303.1 233 64.8
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 1.0e-79 300.8 233 64.4
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.3e-79 300.4 228 63.2
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.3e-79 300.4 224 65.2
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 2.3e-79 299.7 231 64.1
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 2.3e-79 299.7 227 64.8
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 3.0e-79 299.3 226 64.6
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 3.9e-79 298.9 228 62.7
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 5.0e-79 298.5 224 64.3
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.1e-78 297.4 224 63.4
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 1.9e-78 296.6 221 64.3
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 2.5e-78 296.2 226 63.3
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 2.5e-78 296.2 224 62.5
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 4.3e-78 295.4 240 61.7
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 5.6e-78 295.0 221 64.3
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.2e-77 293.9 237 61.2
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 1.6e-77 293.5 228 61.8
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 2.8e-77 292.7 227 60.8
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 4.7e-77 292.0 226 62.8
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 6.2e-77 291.6 247 58.7
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 1.4e-76 290.4 240 59.6
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 6.8e-76 288.1 231 61.0
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.5e-75 287.0 221 62.9
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.6e-75 286.2 224 60.3
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 9.8e-75 284.3 241 58.9
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 9.8e-75 284.3 235 59.6
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.7e-74 283.5 228 62.3
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 2.2e-74 283.1 224 60.3
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 2.9e-74 282.7 228 61.8
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 6.4e-74 281.6 224 59.8
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 6.4e-74 281.6 224 59.8
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 1.1e-73 280.8 226 61.9
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 1.4e-73 280.4 221 61.5
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 1.6e-72 276.9 237 58.6
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 3.5e-72 275.8 226 59.7
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 4.6e-72 275.4 235 57.0
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.6e-72 275.4 226 59.7
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 4.6e-72 275.4 249 54.2
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 5.1e-71 271.9 249 53.0
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 5.1e-71 271.9 224 58.9
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 8.6e-71 271.2 224 58.5
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 1.5e-70 270.4 233 56.2
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.9e-70 270.0 224 58.9
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 5.6e-70 268.5 224 58.9
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 7.3e-70 268.1 226 59.3
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 9.5e-70 267.7 228 55.7
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 9.5e-70 267.7 234 54.7
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 1.2e-69 267.3 235 54.9
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 2.1e-69 266.5 235 55.3
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 2.1e-69 266.5 228 56.1
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 2.8e-69 266.2 220 62.7
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 3.6e-69 265.8 225 57.3
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 3.6e-69 265.8 228 57.5
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 4.7e-69 265.4 224 58.9
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 8.1e-69 264.6 222 59.0
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.1e-68 264.2 296 48.6
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.8e-68 263.5 228 56.6
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 3.1e-68 262.7 224 56.7
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 3.1e-68 262.7 228 55.7
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 5.2e-68 261.9 228 57.5
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 6.8e-68 261.5 221 57.9
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 6.8e-68 261.5 224 57.6
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 7.5e-67 258.1 236 56.4
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 2.2e-66 256.5 224 55.8
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.9e-66 256.1 224 54.9
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 3.7e-66 255.8 224 56.7
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 4.9e-66 255.4 245 52.7
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 4.9e-66 255.4 245 52.7
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 6.4e-66 255.0 248 51.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 8.3e-66 254.6 248 50.8
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 8.3e-66 254.6 235 55.7
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.9e-65 253.4 264 53.0
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.4e-65 253.1 219 57.1
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 6.6e-63 245.0 246 50.8
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.1e-62 244.2 235 52.3
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.1e-62 244.2 235 52.3
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 9.5e-62 241.1 221 57.9
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.2e-61 240.7 235 52.8
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.6e-61 240.4 211 56.9
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 4.7e-61 238.8 239 51.5
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.1e-60 237.7 205 57.6
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 1.1e-60 237.7 224 53.6
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 1.8e-60 236.9 226 53.1
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 1.8e-60 236.9 228 53.9
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 5.1e-55 218.8 198 56.6
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 8.7e-55 218.0 183 59.6
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.3e-53 214.2 179 55.9
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.1e-53 213.4 264 47.7
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 3.1e-52 209.5 232 49.6
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 3.8e-50 202.6 186 53.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.9e-50 202.2 209 52.6
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.9e-50 202.2 209 52.2
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 4.9e-50 202.2 189 53.4
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.7e-48 196.4 159 62.9
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 5.1e-47 192.2 278 42.8
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 3.6e-45 186.0 188 55.9
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 5.8e-43 178.7 121 71.1
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 3.2e-41 172.9 152 53.9
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 9.3e-41 171.4 170 55.3
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 2.1e-40 170.2 124 66.1
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.8e-39 167.2 159 50.9
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.9e-38 163.7 220 43.2
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 2.5e-38 163.3 245 40.4
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.4e-36 156.8 143 51.7
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 4.9e-34 149.1 123 61.0
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.4e-33 147.5 217 35.0
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 8.2e-29 131.7 223 34.1
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 5.0e-26 122.5 135 48.1
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 7.4e-22 108.6 138 40.6
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 8.2e-21 105.1 82 61.0
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 2.5e-14 83.6 102 43.1
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 7.9e-08 62.0 61 50.8
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 6.7e-07 58.9 43 60.5
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 1.1e-06 58.2 76 43.4


User provided reference genes

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