Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 2.5e-111 405.6 230 100.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 3.6e-105 385.2 231 95.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 2.6e-100 369.0 232 92.7
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 8.0e-89 330.9 233 80.3
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-87 327.0 236 81.4
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 8.2e-86 320.9 232 79.3
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.4e-85 319.3 231 80.1
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.1e-85 318.9 232 79.3
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.3e-85 318.2 232 77.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 7.0e-85 317.8 233 81.5
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 79.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.0e-84 316.2 233 80.7
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.0e-84 316.2 231 79.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.6e-84 315.8 233 79.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 4.5e-84 315.1 233 80.3
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 4.5e-84 315.1 233 80.3
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.9e-84 314.7 234 77.8
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.9e-84 314.7 234 77.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.3e-83 313.5 233 77.3
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.3e-83 313.5 231 77.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.3e-83 313.5 233 80.3
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.3e-83 313.5 230 77.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.7e-83 313.2 230 78.3
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.2e-83 312.8 231 80.1
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 6.5e-83 311.2 233 77.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 6.5e-83 311.2 233 79.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.1e-82 310.5 233 76.8
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.5e-82 310.1 233 76.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.5e-82 309.3 233 80.7
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.2e-82 308.5 249 73.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 4.2e-82 308.5 233 79.0
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 5.5e-82 308.1 233 76.0
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 5.5e-82 308.1 233 76.0
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 5.5e-82 308.1 233 76.0
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.5e-82 308.1 232 78.9
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 9.4e-82 307.4 233 76.4
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 9.4e-82 307.4 231 76.6
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.6e-81 306.6 230 77.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 2.1e-81 306.2 232 76.3
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.1e-81 306.2 232 76.3
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.1e-81 306.2 235 76.6
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.7e-81 305.8 232 75.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 79.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.7e-81 305.1 234 79.1
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.1e-81 304.7 235 76.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 75.5
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 75.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 77.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 75.2
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 75.2
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.4e-80 303.5 235 78.3
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.8e-80 303.1 231 75.8
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.8e-80 303.1 234 78.6
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.3e-80 302.8 233 75.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-80 302.4 233 76.0
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 3.0e-80 302.4 232 77.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.0e-80 302.4 231 77.9
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 4.0e-80 302.0 231 77.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 5.2e-80 301.6 230 77.4
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.2e-80 301.6 231 76.6
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 8.8e-80 300.8 234 76.5
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 74.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 74.7
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 74.7
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 74.7
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-79 300.1 233 74.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.5e-79 300.1 235 75.3
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 4.4e-79 298.5 231 77.1
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.4e-79 298.5 233 76.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 5.7e-79 298.1 244 74.2
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 7.5e-79 297.7 231 76.6
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.3e-78 297.0 231 75.8
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.3e-78 297.0 230 75.2
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.3e-78 297.0 238 75.6
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.7e-78 296.6 233 78.1
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-78 296.6 233 74.2
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.8e-78 295.8 231 77.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.7e-78 295.4 234 76.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.7e-78 295.4 231 76.6
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.7e-78 295.4 233 76.0
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 4.8e-78 295.0 233 75.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.1e-77 293.9 232 75.0
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 5.3e-77 291.6 232 74.6
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 5.3e-77 291.6 232 75.9
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 7.0e-77 291.2 231 74.5
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 9.1e-77 290.8 233 74.7
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 9.1e-77 290.8 230 72.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.6e-76 290.0 231 72.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.6e-76 290.0 233 74.2
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.8e-75 285.4 234 72.6
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 6.5e-75 284.6 231 74.0
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-74 283.9 233 73.4
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 73.8
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 4.2e-74 282.0 232 74.1
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.5e-74 281.6 231 68.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 9.4e-74 280.8 236 74.2
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 9.4e-74 280.8 230 73.9
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 9.4e-74 280.8 233 70.4
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.6e-73 278.9 231 69.3
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.1e-73 278.1 231 71.9
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.3e-72 276.2 230 66.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.3e-72 276.2 239 72.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 6.8e-72 274.6 253 64.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 8.8e-72 274.2 230 67.8
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.5e-71 273.5 230 71.7
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.5e-71 273.5 231 71.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.0e-71 273.1 233 70.8
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.0e-71 273.1 235 73.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 4.4e-71 271.9 231 71.4
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.3e-70 270.4 232 73.7
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.7e-70 270.0 234 71.8
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.2e-70 269.6 230 65.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.7e-70 268.9 233 69.5
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.8e-70 268.5 287 58.5
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-69 266.9 232 68.5
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.8e-69 266.5 217 74.7
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 5.4e-69 265.0 235 70.6
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 5.4e-69 265.0 235 70.6
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.6e-68 263.5 234 70.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.0e-68 263.1 233 68.2
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 4.5e-68 261.9 232 69.0
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 8.6e-67 257.7 227 70.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.7e-65 251.9 230 64.3
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.8e-64 250.0 231 66.7
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.3e-64 249.6 230 67.4
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.0e-64 248.8 233 66.5
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 6.8e-64 248.1 231 67.5
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.4e-63 245.4 230 66.5
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-62 242.7 230 66.1
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.8e-62 242.7 233 65.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 4.9e-62 241.9 231 65.4
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.4e-61 240.4 272 59.2
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-61 239.6 230 65.2
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.0e-61 238.0 233 67.0
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.0e-59 234.2 230 65.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 6.8e-56 221.5 232 63.8
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 1.5e-55 220.3 232 62.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 4.9e-54 215.3 190 72.1
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.4e-53 213.0 238 60.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.9e-51 205.7 186 69.9
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 8.6e-51 204.5 153 81.7
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 4.3e-50 202.2 233 56.2
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-48 196.1 233 57.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 9.8e-47 191.0 240 53.3
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.9e-46 188.7 256 50.4
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-44 183.0 189 63.5
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.6e-41 173.7 167 67.7
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.1e-41 173.3 122 78.7
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 3.4e-39 166.0 122 73.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.9e-39 164.5 122 73.8
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.0e-35 154.5 122 68.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-35 154.5 113 74.3
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.3e-35 154.1 153 68.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-34 150.2 113 72.6
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.5e-34 149.8 99 78.8
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 3.3e-34 149.4 110 79.1
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 7.3e-34 148.3 95 82.1
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.6e-33 146.0 166 60.2
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.2e-31 141.0 75 94.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.5e-31 140.6 174 59.2
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.4e-29 133.3 178 52.2
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 3.9e-27 125.9 75 84.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-25 120.9 91 70.3
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.1e-25 120.2 230 41.3
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.8e-25 119.0 83 72.3
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.6e-23 113.2 145 49.7
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 5.8e-23 112.1 112 68.8
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 8.7e-19 98.2 227 35.2
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-17 94.4 182 42.3
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.3e-16 89.0 75 74.7
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.1e-13 81.3 44 86.4
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.6e-12 77.4 73 60.3
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 6.0e-12 75.5 111 42.3
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 7.9e-12 75.1 78 67.9
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.0e-11 74.7 56 67.9
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.2e-09 65.5 92 51.1
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.4e-07 59.7 89 47.2


User provided reference genes

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