Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 1.3e-97 359.8 187 100.0
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 9.3e-96 353.6 187 97.9
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 6.3e-84 314.3 166 99.4
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 9.0e-83 310.5 164 100.0
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 5.9e-82 307.8 164 99.4
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 9.4e-80 300.4 166 95.8
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 1.1e-77 293.5 166 92.2
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 3.9e-70 268.5 166 83.1
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 5.1e-70 268.1 166 84.9
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 5.1e-70 268.1 166 84.9
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.1e-69 266.9 166 84.9
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.1e-69 266.9 166 84.9
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 1.5e-69 266.5 166 84.3
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 1.5e-69 266.5 166 83.7
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 3.3e-69 265.4 176 79.0
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 4.4e-69 265.0 166 80.7
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 4.4e-69 265.0 166 83.7
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 5.7e-69 264.6 166 83.7
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 5.7e-69 264.6 166 82.5
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 5.7e-69 264.6 166 80.7
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 5.7e-69 264.6 166 71.1
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 5.7e-69 264.6 179 78.2
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 7.4e-69 264.2 166 81.3
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 7.4e-69 264.2 166 83.1
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 9.7e-69 263.8 166 81.9
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 1.3e-68 263.5 166 80.7
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.7e-68 263.1 166 81.3
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 2.2e-68 262.7 166 83.7
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 2.8e-68 262.3 166 80.7
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.8e-68 262.3 166 69.3
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 3.7e-68 261.9 166 81.3
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 4.8e-68 261.5 166 80.1
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 8.2e-68 260.8 166 78.9
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.1e-67 260.4 166 81.9
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 1.1e-67 260.4 166 81.9
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.4e-67 260.0 202 61.4
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.8e-67 259.6 166 80.7
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.8e-67 259.6 166 75.9
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.8e-67 259.6 166 83.7
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.8e-67 259.6 166 69.3
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.4e-67 259.2 166 78.9
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 2.4e-67 259.2 166 80.7
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 3.1e-67 258.8 166 81.3
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 3.1e-67 258.8 166 69.9
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 3.1e-67 258.8 166 77.7
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 5.3e-67 258.1 166 69.3
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 9.1e-67 257.3 167 79.6
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 9.1e-67 257.3 166 69.3
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 9.1e-67 257.3 167 80.8
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.2e-66 256.9 166 68.1
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 1.5e-66 256.5 166 78.9
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.5e-66 256.5 166 80.1
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 2.0e-66 256.1 166 79.5
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 2.6e-66 255.8 167 82.6
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 4.5e-66 255.0 166 80.7
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 4.5e-66 255.0 166 79.5
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.9e-66 254.6 167 80.2
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 5.9e-66 254.6 166 77.7
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 7.7e-66 254.2 166 80.1
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.0e-65 253.8 167 81.4
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.0e-65 253.8 166 77.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.0e-65 253.8 166 77.7
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.7e-65 253.1 166 78.9
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.7e-65 253.1 166 77.1
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 1.7e-65 253.1 166 77.1
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 2.2e-65 252.7 166 78.9
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 2.2e-65 252.7 166 78.3
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 2.2e-65 252.7 166 77.7
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 2.9e-65 252.3 167 80.2
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 2.9e-65 252.3 166 78.3
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 2.9e-65 252.3 166 70.5
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 2.9e-65 252.3 166 77.7
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 2.9e-65 252.3 166 78.9
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 2.9e-65 252.3 166 78.9
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 3.8e-65 251.9 166 75.3
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 5.0e-65 251.5 167 81.4
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 5.0e-65 251.5 166 77.7
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 6.5e-65 251.1 166 78.3
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 6.5e-65 251.1 166 79.5
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 6.5e-65 251.1 166 79.5
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 6.5e-65 251.1 166 77.7
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 1.5e-64 250.0 167 79.6
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 1.5e-64 250.0 167 79.6
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 1.9e-64 249.6 167 80.2
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.5e-64 249.2 167 79.0
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 2.5e-64 249.2 166 77.1
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 2.5e-64 249.2 167 79.6
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 4.2e-64 248.4 166 78.3
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 5.5e-64 248.1 166 80.7
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 9.4e-64 247.3 166 76.5
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 9.4e-64 247.3 183 72.1
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 9.4e-64 247.3 166 77.7
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 1.2e-63 246.9 166 77.1
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 1.6e-63 246.5 166 77.7
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.6e-63 246.5 166 77.1
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 2.7e-63 245.7 166 78.9
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 3.6e-63 245.4 166 77.1
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 4.7e-63 245.0 166 75.9
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 4.7e-63 245.0 166 76.5
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 6.1e-63 244.6 166 77.1
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 6.1e-63 244.6 166 77.1
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 8.0e-63 244.2 166 75.3
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.0e-62 243.8 166 76.5
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.0e-62 243.8 166 77.7
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.0e-62 243.8 166 77.7
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.0e-62 243.8 166 77.7
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.0e-62 243.8 166 78.3
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 1.4e-62 243.4 167 78.4
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 1.4e-62 243.4 166 77.1
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.8e-62 243.0 167 79.6
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 3.0e-62 242.3 167 80.2
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 3.0e-62 242.3 166 78.3
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 5.2e-62 241.5 166 74.1
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 6.7e-62 241.1 166 74.7
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 8.8e-62 240.7 166 74.7
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.5e-61 240.0 167 76.0
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.0e-61 239.6 166 74.7
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 2.6e-61 239.2 166 76.5
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 5.7e-61 238.0 178 73.0
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 5.7e-61 238.0 160 79.4
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 2.8e-60 235.7 189 68.3
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 6.3e-60 234.6 172 74.4
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 6.3e-60 234.6 172 74.4
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 8.2e-60 234.2 172 74.4
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 8.2e-60 234.2 172 74.4
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 8.2e-60 234.2 166 74.7
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.1e-59 233.8 167 74.9
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.4e-59 233.4 167 74.3
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.8e-59 233.0 167 74.3
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 1.8e-59 233.0 167 74.9
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.8e-59 233.0 166 77.1
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 3.1e-59 232.3 167 75.4
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 7.0e-59 231.1 167 73.7
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.6e-58 229.9 167 73.1
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 2.0e-58 229.6 166 63.3
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.6e-58 229.2 166 72.3
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 3.5e-58 228.8 167 74.9
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 5.9e-58 228.0 167 73.7
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.0e-57 227.3 167 74.3
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.3e-57 226.9 167 72.5
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 2.3e-54 216.1 166 69.3
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 8.8e-54 214.2 167 70.1
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 2.2e-49 199.5 227 48.5
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 6.5e-49 198.0 167 63.5
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 3.2e-48 195.7 167 56.3
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 1.2e-47 193.7 164 67.1
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 3.4e-45 185.7 167 50.9
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 5.2e-38 161.8 113 79.6
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 3.7e-36 155.6 101 75.2
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 5.9e-34 148.3 173 43.9
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 7.8e-34 147.9 113 75.2
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 2.6e-29 132.9 165 46.1
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 6.6e-25 118.2 97 53.6
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 3.6e-23 112.5 55 89.1
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.4e-22 110.5 54 87.0
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.4e-21 105.9 166 35.5
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.2e-15 87.4 73 60.3
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 1.6e-15 87.0 61 70.5
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 6.2e-15 85.1 73 58.9
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 2.7e-10 69.7 39 74.4
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 2.3e-09 66.6 40 62.5


User provided reference genes

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