Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb336550 Zea mays HOM05D003914 ORTHO05D001189 5.4e-107 391.0 190 100.0
Zm00001eb037140 Zea mays HOM05D003914 ORTHO05D001189 7.0e-107 390.6 190 99.5
Zm00001eb075600 Zea mays HOM05D003914 ORTHO05D001189 3.5e-106 388.3 190 99.5
Zm00001eb072150 Zea mays HOM05D003914 ORTHO05D001189 7.7e-106 387.1 190 98.9
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 1.7e-105 386.0 190 98.9
Zm00001eb104230 Zea mays HOM05D003914 ORTHO05D001189 1.1e-104 383.3 190 98.4
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 1.0e-102 376.7 190 97.4
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 3.4e-77 292.0 190 71.6
Zm00001eb052930 Zea mays HOM05D003914 ORTHO05D006988 2.8e-71 272.3 137 98.5
Zm00001eb059520 Zea mays HOM05D003914 ORTHO05D001189 4.4e-69 265.0 134 97.8
Zm00001eb421450 Zea mays HOM05D003914 ORTHO05D001189 4.4e-69 265.0 134 97.8
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 1.7e-57 226.5 185 56.2
Zm00001eb236280 Zea mays HOM05D003914 ORTHO05D001189 2.3e-57 226.1 134 86.6
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 4.3e-56 221.9 187 54.0
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 5.6e-56 221.5 185 55.1
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 9.6e-56 220.7 185 54.1
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 2.8e-55 219.2 186 53.2
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 2.8e-55 219.2 188 53.2
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 3.6e-55 218.8 185 55.7
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 6.2e-55 218.0 188 52.1
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 4.0e-54 215.3 185 53.5
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 5.3e-54 214.9 192 52.6
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 5.3e-54 214.9 185 55.1
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 1.5e-53 213.4 185 55.1
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 1.5e-53 213.4 185 55.1
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 1.5e-53 213.4 185 54.1
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 2.6e-53 212.6 184 54.3
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 4.4e-53 211.8 185 53.5
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 4.4e-53 211.8 185 53.5
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 5.8e-53 211.5 188 54.3
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 5.8e-53 211.5 185 51.9
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 7.6e-53 211.1 185 51.9
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 7.6e-53 211.1 188 52.1
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 9.9e-53 210.7 185 54.1
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 1.3e-52 210.3 185 53.0
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 1.7e-52 209.9 185 53.5
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 1.7e-52 209.9 185 53.5
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 1.7e-52 209.9 192 51.6
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 1.7e-52 209.9 186 53.2
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 2.2e-52 209.5 185 50.3
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 2.2e-52 209.5 185 50.3
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 2.9e-52 209.1 186 52.7
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 2.9e-52 209.1 185 50.8
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 3.8e-52 208.8 185 51.4
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 4.9e-52 208.4 185 53.0
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 4.9e-52 208.4 185 53.0
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 4.9e-52 208.4 185 53.5
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 4.9e-52 208.4 185 53.5
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 4.9e-52 208.4 183 54.1
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 6.4e-52 208.0 184 52.2
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 8.4e-52 207.6 184 51.6
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 8.4e-52 207.6 184 50.5
GSVIVG01017553001 Vitis vinifera HOM05D003914 ORTHO05D001189 8.4e-52 207.6 185 50.8
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 1.1e-51 207.2 185 51.4
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 1.4e-51 206.8 184 52.2
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 1.4e-51 206.8 186 52.2
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 1.4e-51 206.8 185 52.4
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 1.9e-51 206.5 185 51.9
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 1.9e-51 206.5 185 52.4
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 1.9e-51 206.5 185 50.3
Zm00001eb154890 Zea mays HOM05D003914 ORTHO05D001189 1.9e-51 206.5 105 97.1
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 2.4e-51 206.1 192 49.5
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 3.2e-51 205.7 191 51.8
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 4.2e-51 205.3 185 52.4
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 5.4e-51 204.9 185 51.9
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 7.1e-51 204.5 188 50.0
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 9.3e-51 204.1 193 49.7
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 1.2e-50 203.8 188 50.0
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 1.6e-50 203.4 185 49.7
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 2.1e-50 203.0 187 48.7
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 2.7e-50 202.6 185 50.3
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 2.7e-50 202.6 188 49.5
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 3.5e-50 202.2 199 48.2
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 3.5e-50 202.2 185 50.3
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 3.5e-50 202.2 185 49.7
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.5e-50 202.2 185 49.7
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.5e-50 202.2 185 49.7
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 3.5e-50 202.2 188 50.5
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 4.6e-50 201.8 188 52.7
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 4.6e-50 201.8 188 50.0
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 6.0e-50 201.4 185 49.7
Zm00001eb386790 Zea mays HOM05D003914 ORTHO05D001189 6.0e-50 201.4 105 95.2
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 1.0e-49 200.7 191 47.6
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 2.3e-49 199.5 188 48.9
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 3.9e-49 198.7 187 48.1
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 5.1e-49 198.4 188 49.5
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 6.6e-49 198.0 188 48.9
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 6.6e-49 198.0 188 51.1
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 1.1e-48 197.2 187 49.2
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 1.5e-48 196.8 184 50.0
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 2.5e-48 196.1 191 49.2
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 4.3e-48 195.3 184 50.0
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 1.3e-47 193.7 184 48.9
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 2.1e-47 193.0 188 48.9
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 2.1e-47 193.0 184 48.9
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 3.6e-47 192.2 188 48.9
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 6.2e-47 191.4 184 48.4
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 8.1e-47 191.0 184 48.4
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.1e-46 190.7 185 49.7
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 9.0e-46 187.6 185 49.2
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 9.0e-46 187.6 185 49.2
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.2e-45 187.2 185 49.2
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 2.6e-45 186.0 188 47.3
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 3.4e-45 185.7 184 46.7
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 1.4e-43 180.3 217 43.3
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 3.2e-43 179.1 185 45.9
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 5.5e-43 178.3 188 47.3
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 1.2e-42 177.2 192 44.8
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 1.8e-41 173.3 174 47.7
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 9.6e-40 167.5 248 38.3
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 1.2e-37 160.6 289 32.9
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 1.5e-37 160.2 192 42.7
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 2.9e-36 156.0 150 50.0
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.9e-35 153.3 182 44.0
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 1.3e-33 147.1 128 49.2
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 3.0e-33 146.0 187 40.1
HanXRQChr02g0034921 Helianthus annuus HOM05D003914 ORTHO05D001189 2.1e-31 139.8 124 48.4
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 2.8e-31 139.4 188 39.9
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 2.8e-31 139.4 182 39.0
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 3.7e-31 139.0 128 47.7
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 1.4e-30 137.1 190 38.9
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 5.0e-28 128.6 88 61.4
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 3.5e-26 122.5 94 56.4
Pp3c26_7670 Physcomitrium patens HOM05D003914 ORTHO05D001189 6.7e-25 118.2 150 40.7
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 6.7e-25 118.2 187 33.7
Atru.chr10.2396 Acer truncatum HOM05D003914 ORTHO05D001189 1.6e-23 113.6 92 55.4
Nn1g04288 Nelumbo nucifera HOM05D003914 ORTHO05D001189 1.4e-22 110.5 99 49.5
SHI11253 Sapria himalayana HOM05D003914 ORTHO05D001189 2.4e-22 109.8 135 42.2
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.6e-18 95.5 145 41.4
CARHR073830 Cardamine hirsuta HOM05D003914 ORTHO05D001189 3.9e-17 92.4 87 50.6
SalBow5G3025 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.7e-12 77.0 100 42.0
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 6.5e-12 75.1 186 27.4
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 1.1e-11 74.3 48 64.6
Zm00001eb206280 Zea mays HOM05D003914 ORTHO05D001189 7.4e-08 61.6 30 90.0
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.2e-07 60.1 46 54.3


User provided reference genes

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