Gene: Solyc03g117120.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g117120.4
  • Transcript Identifier Solyc03g117120.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 60818791-60825781 : negative

Gene Family Information

  • ID HOM05D003914
  • #Genes/#Species 178/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g117120.4.1
  • uniprot A0A3Q7FT18
  • gene_id Solyc03g117120

Descriptions

  • Description Nuclear pore complex protein NUP96 (AHRD V3.3 *** A0A1U8FUU9_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006913
IEA
GOA Databasenucleocytoplasmic transport
GO:0006913
IEA
InterPronucleocytoplasmic transport
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006406
ISO
PLAZA Integrative OrthologymRNA export from nucleus AT1G80680
GO:0002758
ISO
PLAZA Integrative Orthologyinnate immune response-activating signal transduction AT1G80680
GO:0048574
ISO
PLAZA Integrative Orthologylong-day photoperiodism, flowering AT1G80680
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G80680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017056
IEA
GOA Databasestructural constituent of nuclear pore
GO:0017056
IEA
InterProstructural constituent of nuclear pore
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G80680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005643
IEA
GOA Databasenuclear pore
GO:0005643
IEA
InterPronuclear pore
GO:0005634
IEA
GOA Databasenucleus
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT1G80680
GO:0031965
ISO
PLAZA Integrative Orthologynuclear membrane AT1G80680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036903 Peptidase S59, nucleoporin superfamily
IPR037665 Nucleoporin peptidase S59-like
IPR021967 Nuclear protein 96
IPR037637 Nuclear pore complex protein NUP98-NUP96
IPR007230 Peptidase S59, nucleoporin
Mapman id Description
23.5.1.1.1.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (NUP96/MOS3)