Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 3.9e-170 602.8 820 100.0
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 5.7e-73 280.0 779 79.5
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 3.9e-69 267.3 781 76.3
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 2.9e-64 251.1 777 78.5
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 3.2e-63 247.7 145 79.3
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 9.2e-63 246.1 783 71.9
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 4.6e-62 243.8 782 78.0
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 7.8e-62 243.0 781 76.3
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.3e-61 241.5 783 76.2
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.0e-61 241.1 786 68.6
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 3.9e-61 240.7 779 69.8
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 6.6e-61 240.0 777 78.8
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 6.6e-61 240.0 773 78.4
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.1e-60 239.2 773 78.9
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.9e-60 238.4 780 77.9
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 3.3e-60 237.7 777 77.9
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 9.5e-60 236.1 790 77.1
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 1.2e-59 235.7 779 76.1
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.1e-59 235.0 779 77.8
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.1e-59 235.0 779 68.9
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 2.1e-59 235.0 773 75.4
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 4.7e-59 233.8 770 78.2
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 6.2e-59 233.4 786 61.8
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 3.1e-58 231.1 781 71.2
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 8.9e-58 229.6 784 71.0
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 1.2e-57 229.2 788 69.9
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 5.8e-57 226.9 772 78.9
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 7.5e-57 226.5 326 76.7
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 9.8e-57 226.1 794 67.4
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 1.3e-56 225.7 779 76.6
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 4.9e-56 223.8 784 64.9
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 8.3e-56 223.0 772 78.2
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.2e-55 221.1 766 77.5
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 1.2e-54 219.2 779 77.8
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 2.1e-54 218.4 779 77.2
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 6.0e-54 216.9 777 76.8
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.3e-53 214.9 779 76.3
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.5e-52 211.5 154 62.3
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.5e-52 211.5 154 62.3
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 3.3e-52 211.1 783 75.5
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 3.3e-52 211.1 773 76.7
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 4.3e-52 210.7 153 62.7
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.2e-51 209.1 783 75.4
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 1.2e-51 209.1 149 64.4
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.2e-51 209.1 326 75.8
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 2.8e-51 208.0 324 73.8
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 6.2e-51 206.8 772 71.4
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 8.1e-51 206.5 317 75.7
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 8.1e-51 206.5 802 75.1
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.4e-50 205.7 867 61.8
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.4e-50 205.7 768 59.6
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.4e-50 205.7 153 60.1
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 2.3e-50 204.9 324 74.1
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 3.1e-50 204.5 772 78.0
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 4.0e-50 204.1 802 74.8
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 1.2e-49 202.6 749 55.5
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.2e-49 202.6 797 58.8
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.5e-49 202.2 160 57.5
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 2.0e-49 201.8 772 70.7
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 5.8e-49 200.3 144 63.2
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 5.8e-49 200.3 144 63.2
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 1.3e-48 199.1 149 59.1
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.7e-48 198.7 317 74.8
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.7e-48 198.7 770 78.2
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 4.9e-48 197.2 151 60.9
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.4e-48 196.8 317 72.9
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 1.1e-47 196.1 316 70.6
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-47 195.7 144 61.1
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 4.1e-47 194.1 170 56.5
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 4.1e-47 194.1 171 57.3
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 5.4e-47 193.7 342 66.7
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 7.1e-47 193.4 776 76.2
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 9.2e-47 193.0 170 55.9
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 1.6e-46 192.2 149 61.1
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 2.7e-46 191.4 144 60.4
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 3.5e-46 191.0 170 55.3
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.5e-46 191.0 144 59.0
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 4.6e-46 190.7 144 61.8
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 3.0e-45 188.0 154 55.2
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 3.0e-45 188.0 144 59.7
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 3.9e-45 187.6 144 59.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 6.6e-45 186.8 187 50.3
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 6.6e-45 186.8 145 61.4
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 8.6e-45 186.4 177 52.5
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 3.6e-43 181.0 151 56.3
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 4.7e-43 180.6 151 56.3
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 6.2e-43 180.3 149 57.7
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 6.2e-43 180.3 149 57.7
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.9e-39 168.7 128 60.9
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.7e-38 164.9 324 69.1
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 6.6e-37 160.2 782 65.3
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.5e-33 149.1 152 46.1
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 2.6e-33 148.3 149 44.3
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.4e-33 147.5 152 42.8
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 3.8e-32 144.4 149 43.0
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 1.9e-31 142.1 123 55.3
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 1.9e-31 142.1 151 42.4
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.2e-31 141.0 149 43.0
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 5.4e-31 140.6 134 51.5
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 1.6e-30 139.0 151 40.4
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.6e-30 139.0 117 55.6
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 3.5e-30 137.9 149 40.3
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.6e-30 137.5 149 42.3
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 2.3e-29 135.2 144 43.8
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 6.6e-29 133.7 149 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 4.8e-27 127.5 126 50.0
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 6.2e-27 127.1 545 33.2
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.4e-26 125.9 112 48.2
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 5.8e-25 120.6 66 75.8
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 4.6e-22 110.9 120 48.3
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 9.6e-20 103.2 239 58.6
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.7e-19 101.3 105 42.9
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.2e-19 100.5 117 44.4
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 4.0e-18 97.8 148 37.8
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 2.5e-15 88.6 109 45.9
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 7.1e-15 87.0 89 46.1
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.2e-14 86.3 76 51.3
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.9e-13 81.3 77 48.1
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 4.3e-12 77.8 77 46.8
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.8e-10 72.4 74 41.9
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.3e-08 66.2 76 44.7
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.2e-07 61.6 43 60.5


User provided reference genes

Program Settings