Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 3.1e-103 379.0 280 100.0
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 8.3e-56 221.5 231 68.8
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 1.1e-55 221.1 232 67.2
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 5.4e-55 218.8 231 66.2
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 5.4e-55 218.8 231 59.7
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 1.2e-54 217.6 237 71.7
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.0e-54 216.9 231 59.7
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 2.7e-54 216.5 247 59.1
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 2.7e-54 216.5 231 64.1
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 4.5e-54 215.7 231 57.1
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 7.7e-54 214.9 232 64.2
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 7.7e-54 214.9 231 61.9
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 7.7e-54 214.9 231 63.2
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 7.7e-54 214.9 225 59.1
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 3.8e-53 212.6 231 60.2
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 3.8e-53 212.6 232 56.0
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 6.6e-53 211.8 226 66.8
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 6.6e-53 211.8 253 61.3
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 1.1e-52 211.1 246 63.0
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 2.5e-52 209.9 266 66.5
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 3.3e-52 209.5 222 63.5
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 3.3e-52 209.5 231 66.2
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 4.2e-52 209.1 229 74.2
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 7.2e-52 208.4 253 60.5
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 9.5e-52 208.0 244 72.5
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 1.2e-51 207.6 231 68.4
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 2.1e-51 206.8 276 64.1
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 2.1e-51 206.8 254 60.2
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 2.1e-51 206.8 223 73.5
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 1.4e-50 204.1 250 53.6
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 1.8e-50 203.8 280 55.4
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 1.8e-50 203.8 231 60.6
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 2.3e-50 203.4 226 70.4
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 2.3e-50 203.4 226 59.7
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 3.0e-50 203.0 231 71.0
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 2.6e-49 199.9 239 53.6
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 7.5e-49 198.4 234 57.7
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 1.3e-48 197.6 231 62.3
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 1.7e-48 197.2 242 58.3
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 3.7e-48 196.1 230 56.1
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 8.3e-48 194.9 257 54.9
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.1e-47 194.5 165 66.7
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 1.1e-47 194.5 242 57.0
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 1.1e-47 194.5 242 57.0
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 1.1e-47 194.5 242 57.0
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.1e-47 194.5 235 61.3
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 1.4e-47 194.1 226 76.1
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.8e-47 193.7 230 49.1
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 1.8e-47 193.7 242 57.0
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 2.4e-47 193.4 249 46.2
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 3.2e-47 193.0 231 54.1
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 5.4e-47 192.2 242 56.6
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 7.0e-47 191.8 213 72.3
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 9.2e-47 191.4 239 57.3
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 1.6e-46 190.7 226 66.4
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 1.6e-46 190.7 269 65.1
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.7e-46 189.9 245 53.5
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 3.5e-46 189.5 237 63.7
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 4.6e-46 189.1 275 46.5
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 4.6e-46 189.1 224 59.8
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 5.9e-46 188.7 173 66.5
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 5.9e-46 188.7 293 42.7
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.0e-45 188.0 230 58.3
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 1.0e-45 188.0 230 58.7
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 2.9e-45 186.4 247 55.9
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 3.9e-45 186.0 230 62.6
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 5.0e-45 185.7 230 73.9
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 5.0e-45 185.7 224 68.3
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.1e-44 184.5 230 56.5
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 1.1e-44 184.5 273 58.6
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 1.5e-44 184.1 235 64.3
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 1.5e-44 184.1 224 64.3
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 2.5e-44 183.3 241 65.1
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 2.5e-44 183.3 230 63.9
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 5.6e-44 182.2 254 59.4
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 7.3e-44 181.8 252 62.7
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 1.6e-43 180.6 226 63.7
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 3.6e-43 179.5 231 63.6
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 3.6e-43 179.5 231 63.6
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 4.7e-43 179.1 233 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 4.9e-40 169.1 270 55.9
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.9e-39 167.2 270 38.9
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.2e-38 164.5 143 53.1
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 1.7e-37 160.6 230 53.9
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 1.7e-37 160.6 217 63.1
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 3.0e-37 159.8 142 70.4
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 1.1e-36 157.9 143 75.5
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 1.1e-36 157.9 251 48.6
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 3.6e-35 152.9 142 64.8
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 4.0e-34 149.4 163 47.2
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 6.8e-34 148.7 213 65.3
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.2e-33 147.9 259 51.7
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.5e-33 147.5 290 43.4
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 2.6e-33 146.7 139 76.3
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 1.7e-32 144.1 228 56.1
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 1.7e-32 144.1 226 58.4
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 8.3e-32 141.7 143 67.1
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 1.9e-31 140.6 214 65.4
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 1.9e-31 140.6 230 63.0
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 3.2e-31 139.8 223 47.1
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 9.2e-31 138.3 231 60.2
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 3.9e-29 132.9 250 46.0
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 5.1e-29 132.5 274 57.7
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 2.5e-28 130.2 152 71.1
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 7.3e-28 128.6 273 45.1
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 1.2e-25 121.3 145 44.1
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 1.3e-24 117.9 122 49.2
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 9.2e-23 111.7 120 67.5
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 2.1e-22 110.5 160 66.9
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.0e-21 106.7 156 42.3
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 3.4e-17 93.2 104 43.3
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 5.8e-17 92.4 107 59.8
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 7.6e-17 92.0 261 36.8
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 1.9e-15 87.4 103 69.9
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 1.5e-12 77.8 243 42.0
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 3.1e-10 70.1 42 73.8
MD10G1314000 Malus domestica HOM05D006314 ORTHO05D007970 3.5e-06 56.6 40 60.0


User provided reference genes

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