Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.5e-178 629.4 322 100.0
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 9.3e-136 487.3 318 82.4
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.1e-120 437.2 324 73.8
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.7e-92 343.6 290 69.3
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 5.4e-59 232.3 308 44.2
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.0e-59 231.9 304 43.8
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.6e-58 230.7 305 43.0
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.3e-57 227.6 300 44.0
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.3e-57 227.6 306 44.4
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.3e-57 226.9 305 43.0
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 3.0e-57 226.5 306 43.8
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 5.0e-57 225.7 306 45.4
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 5.0e-57 225.7 304 41.8
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 8.6e-57 224.9 301 42.9
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.9e-56 223.8 313 43.8
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.5e-56 223.4 311 42.4
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.5e-56 223.4 306 42.8
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.3e-56 223.0 304 44.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 5.6e-56 222.2 304 45.1
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 9.5e-56 221.5 304 45.1
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 9.5e-56 221.5 306 43.1
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.6e-55 220.7 306 43.8
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.6e-55 220.7 305 43.3
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.1e-55 220.3 301 41.9
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.2e-55 218.8 307 42.7
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 6.2e-55 218.8 303 40.6
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 6.2e-55 218.8 305 43.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 6.2e-55 218.8 306 42.8
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.2e-55 218.8 303 43.2
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.1e-54 218.0 310 41.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 1.1e-54 218.0 311 41.2
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.4e-54 217.6 301 42.5
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.8e-54 217.2 306 43.5
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 4.0e-54 216.1 223 48.4
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 4.0e-54 216.1 317 40.1
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.5e-53 214.2 306 42.8
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 2.0e-53 213.8 306 40.8
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 2.0e-53 213.8 305 41.0
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 2.0e-53 213.8 312 42.6
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 2.0e-53 213.8 302 42.7
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.0e-53 213.8 295 40.3
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.6e-53 213.4 303 42.9
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.6e-53 213.4 295 40.3
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.4e-53 213.0 304 41.1
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 5.8e-53 212.2 303 42.6
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 5.8e-53 212.2 303 42.9
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 2.9e-52 209.9 302 42.7
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 3.7e-52 209.5 312 40.7
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.7e-52 209.5 240 45.0
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.1e-51 206.1 225 47.6
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 5.4e-51 205.7 301 39.9
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 9.2e-51 204.9 302 39.4
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 1.2e-50 204.5 249 43.8
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.2e-50 204.5 316 41.1
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 2.1e-50 203.8 285 40.7
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 7.8e-50 201.8 312 39.4
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.0e-49 201.4 306 41.5
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.3e-49 201.1 239 44.4
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 3.0e-49 199.9 303 39.6
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 3.0e-49 199.9 218 45.9
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.0e-49 199.9 305 41.3
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 3.9e-49 199.5 289 41.2
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.5e-48 197.6 303 38.3
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 3.3e-48 196.4 276 42.4
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 3.3e-48 196.4 283 40.6
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 5.6e-48 195.7 305 40.0
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 9.5e-48 194.9 223 45.3
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.2e-47 194.5 311 37.3
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.6e-47 194.1 305 39.0
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 2.8e-47 193.4 300 40.3
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 2.3e-46 190.3 282 40.4
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 3.4e-45 186.4 277 40.1
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 5.8e-45 185.7 305 38.4
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.2e-44 183.7 314 36.6
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 2.2e-44 183.7 269 41.3
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 3.8e-44 183.0 303 38.3
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 4.1e-43 179.5 194 48.5
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 5.4e-43 179.1 314 36.6
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 7.1e-43 178.7 232 42.7
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 7.1e-43 178.7 311 37.6
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.2e-42 177.9 232 42.7
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 7.8e-42 175.3 200 46.0
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.0e-41 174.9 304 38.2
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.7e-41 174.1 286 39.2
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 3.0e-41 173.3 302 36.8
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 3.9e-41 172.9 260 41.2
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.9e-41 172.9 316 37.7
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 3.9e-41 172.9 311 35.7
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.9e-41 172.9 213 42.7
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 5.1e-41 172.6 280 38.6
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 6.6e-41 172.2 311 35.0
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 7.3e-40 168.7 312 34.9
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.6e-39 167.5 288 35.8
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 6.2e-39 165.6 280 39.3
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 4.0e-38 162.9 273 37.7
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.2e-37 161.4 222 41.0
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.6e-37 160.2 197 44.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.9e-35 154.1 195 43.1
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 7.8e-34 148.7 311 33.1
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.7e-33 147.5 202 42.1
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.0e-33 146.7 182 44.5
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 8.7e-33 145.2 272 34.2
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 4.8e-31 139.4 239 38.1
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 6.2e-31 139.0 243 37.4
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 4.0e-30 136.3 281 33.5
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.2e-29 134.8 328 31.7
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 2.0e-29 134.0 283 33.6
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.4e-29 133.3 124 47.6
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 9.9e-29 131.7 217 36.4
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 5.4e-27 125.9 244 34.8
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.6e-26 124.4 260 34.6
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.1e-26 124.0 124 46.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 2.1e-26 124.0 104 53.8
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.9e-24 117.5 105 50.5
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 9.6e-24 115.2 103 50.5
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 6.2e-23 112.5 246 31.7
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 8.1e-23 112.1 238 34.0
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.4e-22 110.5 99 54.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.9e-20 102.8 295 32.2
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.9e-16 90.9 62 67.7
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.9e-16 90.9 62 67.7
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.2e-13 81.6 123 35.0
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.5e-11 73.9 198 30.8
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 7.1e-11 72.4 63 52.4
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 1.6e-10 71.2 144 29.2
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 2.3e-09 67.4 184 26.6
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 7.4e-08 62.4 81 42.0


User provided reference genes

Program Settings