Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 3.0e-199 698.4 362 100.0
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 2.2e-77 293.5 379 51.5
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 6.3e-40 169.1 269 38.7
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 6.3e-40 169.1 406 34.7
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 2.4e-31 140.6 134 47.8
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 9.1e-31 138.7 248 35.1
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 1.6e-30 137.9 175 38.9
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 1.6e-30 137.9 238 35.7
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 2.7e-30 137.1 243 31.3
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 3.5e-30 136.7 182 42.9
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 3.5e-30 136.7 246 34.6
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 7.7e-30 135.6 156 41.0
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.0e-29 135.2 164 43.3
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 1.3e-29 134.8 121 51.2
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 2.9e-29 133.7 256 33.6
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.9e-29 133.7 175 41.1
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.9e-29 133.7 175 41.1
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 2.9e-29 133.7 124 46.8
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 2.9e-29 133.7 249 30.9
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 8.5e-29 132.1 164 40.2
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 8.5e-29 132.1 164 42.7
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.1e-28 131.7 109 51.4
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.1e-28 131.7 178 41.6
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.5e-28 130.6 121 49.6
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 3.2e-28 130.2 234 33.3
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.2e-28 130.2 118 50.0
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 4.2e-28 129.8 132 43.9
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 5.5e-28 129.4 125 48.0
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.5e-28 129.4 125 48.0
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.5e-28 129.4 125 48.0
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 7.2e-28 129.0 165 43.0
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 1.2e-27 128.3 256 32.0
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.2e-27 128.3 144 41.7
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.2e-27 128.3 164 41.5
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.7e-27 127.1 125 47.2
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 3.6e-27 126.7 109 48.6
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 3.6e-27 126.7 158 41.1
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 3.6e-27 126.7 108 50.0
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 4.7e-27 126.3 223 33.6
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 4.7e-27 126.3 183 38.3
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 4.7e-27 126.3 239 33.1
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 4.7e-27 126.3 242 32.6
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 4.7e-27 126.3 142 44.4
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 6.1e-27 125.9 193 36.3
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 6.1e-27 125.9 120 47.5
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 8.0e-27 125.6 244 34.0
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 8.0e-27 125.6 182 37.9
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 1.0e-26 125.2 125 44.8
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.0e-26 125.2 156 42.3
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 1.4e-26 124.8 177 37.9
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 1.8e-26 124.4 155 41.3
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 2.3e-26 124.0 140 41.4
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 2.3e-26 124.0 140 41.4
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 2.3e-26 124.0 126 43.7
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 3.0e-26 123.6 276 32.6
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.0e-26 123.6 139 43.2
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 3.0e-26 123.6 121 43.8
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 3.0e-26 123.6 142 40.8
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 3.0e-26 123.6 137 40.1
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 3.0e-26 123.6 259 32.0
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 4.0e-26 123.2 223 35.0
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 5.2e-26 122.9 170 41.2
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 6.8e-26 122.5 323 30.0
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 8.8e-26 122.1 160 40.6
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.5e-25 121.3 193 35.8
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 1.5e-25 121.3 122 45.1
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 1.5e-25 121.3 172 40.7
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 2.0e-25 120.9 226 34.1
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 2.0e-25 120.9 115 48.7
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 2.0e-25 120.9 184 38.0
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 2.6e-25 120.6 210 35.7
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.6e-25 120.6 173 37.6
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.6e-25 120.6 173 37.6
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 3.4e-25 120.2 149 43.0
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 4.4e-25 119.8 149 43.0
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 4.4e-25 119.8 108 45.4
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 5.7e-25 119.4 143 38.5
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 5.7e-25 119.4 120 43.3
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 7.5e-25 119.0 146 43.2
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 7.5e-25 119.0 189 36.0
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 9.8e-25 118.6 128 44.5
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 9.8e-25 118.6 124 41.9
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 9.8e-25 118.6 125 46.4
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 9.8e-25 118.6 121 44.6
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 9.8e-25 118.6 164 39.6
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 1.3e-24 118.2 189 34.9
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 1.7e-24 117.9 270 31.1
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 1.7e-24 117.9 251 31.1
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 2.2e-24 117.5 154 38.3
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 2.8e-24 117.1 145 37.9
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.7e-24 116.7 117 45.3
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 3.7e-24 116.7 243 32.9
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 3.7e-24 116.7 218 33.5
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 4.8e-24 116.3 120 44.2
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 4.8e-24 116.3 211 32.7
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.8e-24 116.3 116 43.1
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.8e-24 116.3 116 43.1
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 4.8e-24 116.3 174 37.4
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.3e-24 115.9 169 36.1
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 6.3e-24 115.9 179 36.9
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 6.3e-24 115.9 119 42.9
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 6.3e-24 115.9 198 35.4
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 1.1e-23 115.2 256 30.5
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 1.1e-23 115.2 123 43.1
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.4e-23 114.8 144 39.6
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.4e-23 114.8 119 42.9
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.4e-23 114.8 159 40.3
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.4e-23 114.8 117 40.2
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 1.8e-23 114.4 135 41.5
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.4e-23 114.0 116 42.2
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.4e-23 114.0 116 42.2
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 3.1e-23 113.6 224 31.7
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 3.1e-23 113.6 156 41.0
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 3.1e-23 113.6 167 36.5
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 3.1e-23 113.6 135 38.5
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 3.1e-23 113.6 196 34.7
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 4.1e-23 113.2 116 42.2
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 4.1e-23 113.2 128 41.4
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 4.1e-23 113.2 178 33.7
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 5.4e-23 112.8 134 39.6
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 5.4e-23 112.8 146 41.1
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 7.0e-23 112.5 155 35.5
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 9.1e-23 112.1 120 41.7
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 1.2e-22 111.7 146 39.0
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-22 111.7 146 39.7
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-22 111.7 109 42.2
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 1.2e-22 111.7 171 33.3
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 1.6e-22 111.3 168 35.1
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 1.6e-22 111.3 168 35.1
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 1.6e-22 111.3 251 31.1
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 1.6e-22 111.3 112 46.4
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 1.6e-22 111.3 111 43.2
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 1.6e-22 111.3 204 37.3
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 2.0e-22 110.9 138 39.9
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.5e-22 109.8 134 42.5
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 1.0e-21 108.6 119 40.3
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 1.3e-21 108.2 138 39.1
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 1.3e-21 108.2 143 38.5
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 1.3e-21 108.2 138 39.1
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 1.3e-21 108.2 143 38.5
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 2.3e-21 107.5 259 31.3
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 2.9e-21 107.1 273 28.6
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 5.0e-21 106.3 264 29.2
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 6.5e-21 105.9 146 37.7
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 6.5e-21 105.9 100 45.0
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.1e-20 105.1 123 39.8
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 2.5e-20 104.0 212 31.1
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 9.5e-20 102.1 119 42.0
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 2.1e-19 100.9 107 39.3
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 6.1e-19 99.4 159 34.6
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 3.0e-18 97.1 158 32.3
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 4.4e-17 93.2 150 35.3
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 9.8e-17 92.0 148 37.8
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 2.8e-16 90.5 152 35.5
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.8e-16 90.5 242 31.4
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 6.3e-16 89.4 170 35.9
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 7.0e-15 85.9 92 41.3
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 2.0e-14 84.3 75 46.7
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 1.7e-13 81.3 100 36.0
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 1.7e-13 81.3 190 28.9
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 7.3e-12 75.9 206 30.1
MCO03G441 Micromonas commoda HOM05D022748 ORTHO05D003935 2.1e-11 74.3 101 31.7
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 1.0e-10 72.0 86 38.4
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.5e-09 68.2 134 32.8
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 3.4e-09 67.0 55 45.5
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 5.8e-09 66.2 146 29.5
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 2.2e-08 64.3 61 49.2
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 4.9e-08 63.2 79 39.2
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 4.9e-08 63.2 101 33.7
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 1.9e-07 61.2 114 32.5
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 1.9e-07 61.2 143 27.3
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.9e-07 61.2 43 55.8
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 2.4e-07 60.8 139 31.7
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 2.4e-07 60.8 112 30.4
Cre12.g492750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D138784 5.4e-07 59.7 107 35.5
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.2e-06 58.5 153 22.9
PRCOL_00004061 Prasinoderma coloniale HOM05D003809 ORTHO05D003935 1.6e-06 58.2 187 25.7
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 2.0e-06 57.8 159 26.4
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 2.7e-06 57.4 136 27.2
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 2.7e-06 57.4 95 28.4
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 3.5e-06 57.0 159 26.4
MBI07_g41650_MAGBIO Magnolia biondii HOM05D001235 ORTHO05D005684 3.5e-06 57.0 97 28.9
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 3.5e-06 57.0 64 35.9
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 3.5e-06 57.0 90 30.0
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 6.0e-06 56.2 172 27.3


User provided reference genes

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