Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 2.3e-82 308.9 164 100.0
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 2.3e-82 308.9 164 100.0
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 8.8e-82 307.0 164 98.2
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 1.5e-81 306.2 164 99.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 1.5e-81 306.2 164 99.4
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.2e-77 292.4 164 95.7
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 2.7e-75 285.4 164 92.1
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 9.4e-68 260.4 164 82.9
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.2e-67 260.0 164 84.8
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.2e-67 260.0 164 84.8
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.7e-67 258.8 164 84.8
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.7e-67 258.8 164 84.8
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 3.6e-67 258.5 164 84.1
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 3.6e-67 258.5 164 83.5
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 6.1e-67 257.7 164 81.7
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 1.0e-66 256.9 164 80.5
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 1.0e-66 256.9 164 83.5
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.4e-66 256.5 164 82.3
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.4e-66 256.5 164 83.5
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.4e-66 256.5 164 82.3
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 1.4e-66 256.5 164 80.5
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.4e-66 256.5 164 70.7
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 1.8e-66 256.1 164 81.1
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.8e-66 256.1 164 82.9
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.3e-66 255.8 164 81.7
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 3.0e-66 255.4 164 80.5
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 4.0e-66 255.0 164 81.1
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 5.2e-66 254.6 164 83.5
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 6.7e-66 254.2 164 80.5
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 6.7e-66 254.2 164 68.9
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 8.8e-66 253.8 164 81.1
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.2e-65 253.4 164 79.9
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.0e-65 252.7 164 78.7
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 2.6e-65 252.3 164 81.7
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 2.6e-65 252.3 164 81.7
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.4e-65 251.5 164 80.5
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 4.4e-65 251.5 164 75.6
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 4.4e-65 251.5 164 83.5
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 4.4e-65 251.5 164 68.9
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 5.7e-65 251.1 164 78.7
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 5.7e-65 251.1 164 80.5
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 7.5e-65 250.8 164 81.1
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 7.5e-65 250.8 164 69.5
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 7.5e-65 250.8 164 77.4
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 1.3e-64 250.0 164 68.9
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 2.2e-64 249.2 165 79.4
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 2.2e-64 249.2 164 68.9
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.2e-64 249.2 165 80.6
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 2.8e-64 248.8 164 67.7
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 3.7e-64 248.4 164 78.7
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 3.7e-64 248.4 164 79.9
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 4.8e-64 248.1 164 79.3
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 6.3e-64 247.7 165 82.4
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 1.1e-63 246.9 164 80.5
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.1e-63 246.9 164 79.3
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.4e-63 246.5 165 80.0
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.4e-63 246.5 164 77.4
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.8e-63 246.1 164 79.9
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.4e-63 245.7 165 81.2
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.4e-63 245.7 164 76.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 2.4e-63 245.7 164 77.4
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 4.1e-63 245.0 164 78.7
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 4.1e-63 245.0 164 76.8
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 4.1e-63 245.0 164 76.8
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 5.3e-63 244.6 164 78.7
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 5.3e-63 244.6 164 78.0
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 5.3e-63 244.6 164 77.4
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 7.0e-63 244.2 165 80.0
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 7.0e-63 244.2 164 78.0
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 7.0e-63 244.2 164 70.1
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 7.0e-63 244.2 164 77.4
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 7.0e-63 244.2 164 78.7
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 7.0e-63 244.2 164 78.7
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 9.1e-63 243.8 164 75.0
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.2e-62 243.4 165 81.2
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 1.2e-62 243.4 164 77.4
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 1.6e-62 243.0 164 78.0
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.6e-62 243.0 187 61.5
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 1.6e-62 243.0 164 79.3
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 1.6e-62 243.0 164 79.3
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 1.6e-62 243.0 164 77.4
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 3.5e-62 241.9 165 79.4
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 3.5e-62 241.9 165 79.4
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 4.5e-62 241.5 165 80.0
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 5.9e-62 241.1 165 78.8
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 5.9e-62 241.1 164 76.8
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 5.9e-62 241.1 165 79.4
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 1.0e-61 240.4 164 78.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.3e-61 240.0 164 80.5
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.2e-61 239.2 164 76.2
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 2.2e-61 239.2 164 77.4
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 2.9e-61 238.8 164 76.8
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 3.8e-61 238.4 164 77.4
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 3.8e-61 238.4 164 76.8
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 6.5e-61 237.7 164 78.7
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 6.5e-61 237.7 160 79.4
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 8.5e-61 237.3 164 76.8
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 8.5e-61 237.3 164 76.8
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 1.1e-60 236.9 164 75.6
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.1e-60 236.9 164 76.2
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.5e-60 236.5 164 76.8
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.5e-60 236.5 164 76.8
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 1.9e-60 236.1 164 75.0
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.5e-60 235.7 164 76.2
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.5e-60 235.7 164 77.4
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 2.5e-60 235.7 164 77.4
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 2.5e-60 235.7 164 77.4
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 2.5e-60 235.7 164 78.0
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 3.2e-60 235.3 165 78.2
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.2e-60 235.3 164 76.8
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 4.2e-60 235.0 165 79.4
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 7.2e-60 234.2 165 80.0
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 7.2e-60 234.2 164 78.0
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.2e-59 233.4 164 73.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 1.6e-59 233.0 164 74.4
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.1e-59 232.6 164 74.4
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 3.6e-59 231.9 165 75.8
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 3.6e-59 231.9 162 75.3
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 6.1e-59 231.1 164 76.2
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.4e-58 229.9 176 72.7
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 6.8e-58 227.6 187 67.9
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 1.5e-57 226.5 170 74.1
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 1.5e-57 226.5 170 74.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 2.0e-57 226.1 170 74.1
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.0e-57 226.1 170 74.1
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 2.0e-57 226.1 164 74.4
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.6e-57 225.7 165 74.5
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 3.4e-57 225.3 165 73.9
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.4e-57 224.9 165 73.9
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 4.4e-57 224.9 165 74.5
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 4.4e-57 224.9 164 76.8
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 7.5e-57 224.2 165 75.2
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.7e-56 223.0 165 73.3
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 3.7e-56 221.9 165 72.7
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 4.8e-56 221.5 164 62.8
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 6.3e-56 221.1 164 72.0
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 8.3e-56 220.7 165 74.5
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.4e-55 219.9 165 73.3
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.4e-55 219.2 165 73.9
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 3.1e-55 218.8 165 72.1
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 5.5e-52 208.0 164 68.9
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 8.0e-51 204.1 164 69.5
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 5.4e-47 191.4 225 48.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 5.9e-46 188.0 165 55.8
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 5.9e-46 188.0 164 62.8
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 2.9e-45 185.7 162 66.7
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 6.1e-43 177.9 163 50.9
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 4.6e-38 161.8 113 79.6
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 4.3e-36 155.2 101 75.2
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 6.8e-34 147.9 113 75.2
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 1.4e-31 140.2 171 43.3
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 2.5e-28 129.4 162 46.3
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 4.1e-23 112.1 95 53.7
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 8.6e-21 104.4 52 90.4
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 2.5e-20 102.8 52 86.5
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 8.1e-19 97.8 164 34.8
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.1e-15 87.4 73 60.3
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 1.4e-15 87.0 61 70.5
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 5.4e-15 85.1 73 58.9
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 2.4e-10 69.7 39 74.4
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 2.0e-09 66.6 40 62.5


User provided reference genes

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