Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 9.1e-69 263.5 134 100.0
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 9.1e-69 263.5 134 100.0
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 7.2e-66 253.8 134 96.3
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 3.0e-64 248.4 134 92.5
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.5e-55 219.5 134 79.9
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.4e-55 218.0 134 78.4
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 7.5e-55 217.2 134 79.1
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 9.8e-55 216.9 134 79.1
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.3e-54 216.5 134 77.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.2e-54 215.7 134 78.4
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.8e-54 215.3 134 78.4
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.8e-54 215.3 134 77.6
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 3.7e-54 214.9 133 79.7
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.8e-54 214.5 134 77.6
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 4.8e-54 214.5 134 78.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 6.3e-54 214.2 134 76.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 6.3e-54 214.2 134 77.6
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 8.3e-54 213.8 133 76.7
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 8.3e-54 213.8 134 77.6
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.1e-53 213.4 133 75.2
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.1e-53 213.4 134 75.4
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.4e-53 213.0 134 77.6
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.4e-53 213.0 134 76.1
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.4e-53 213.0 134 77.6
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.8e-53 212.6 133 75.9
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.8e-53 212.6 134 75.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.8e-53 212.6 133 77.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 2.4e-53 212.2 134 76.1
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.4e-53 212.2 134 74.6
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.4e-53 212.2 133 76.7
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.4e-53 212.2 134 76.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 3.1e-53 211.8 133 78.2
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 3.1e-53 211.8 134 76.9
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 3.1e-53 211.8 134 78.4
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.1e-53 211.5 134 77.6
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 5.4e-53 211.1 134 75.4
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.4e-53 211.1 134 76.9
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 5.4e-53 211.1 133 79.7
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 9.1e-53 210.3 134 73.9
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 9.1e-53 210.3 134 75.4
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 9.1e-53 210.3 134 75.4
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 9.1e-53 210.3 134 73.9
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.2e-52 209.9 134 73.9
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.2e-52 209.9 134 75.4
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.2e-52 209.9 134 75.4
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 76.1
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.6e-52 209.5 133 74.4
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 74.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 74.6
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 76.1
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 76.1
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-52 209.5 134 74.6
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.0e-52 209.1 134 75.4
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.0e-52 209.1 133 74.4
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.0e-52 209.1 134 76.1
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.7e-52 208.8 133 75.2
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.7e-52 208.8 134 76.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.7e-52 208.8 134 75.4
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 3.5e-52 208.4 133 72.9
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 3.5e-52 208.4 134 76.1
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 3.5e-52 208.4 134 73.9
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 3.5e-52 208.4 134 74.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.5e-52 208.0 134 74.6
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 4.5e-52 208.0 133 73.7
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 5.9e-52 207.6 133 73.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 7.7e-52 207.2 133 72.9
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 7.7e-52 207.2 134 73.1
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 7.7e-52 207.2 134 74.6
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.0e-51 206.8 131 74.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.0e-51 206.8 133 72.9
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-51 206.8 133 77.4
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.0e-51 206.8 133 73.7
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.0e-51 206.8 134 75.4
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.0e-51 206.8 133 74.4
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.3e-51 206.5 134 74.6
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.3e-51 206.5 133 72.2
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.3e-51 206.5 134 74.6
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.7e-51 206.1 134 73.9
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.7e-51 206.1 134 73.9
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.7e-51 206.1 134 73.9
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.2e-51 205.7 133 72.2
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 2.2e-51 205.7 133 74.4
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.2e-51 205.7 133 73.7
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.9e-51 205.3 133 72.9
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.9e-51 205.3 133 72.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.9e-51 205.3 134 75.4
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.9e-51 205.3 133 73.7
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 72.9
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 72.2
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 72.2
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.0e-51 204.5 134 72.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 72.2
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 72.2
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.0e-51 204.5 133 74.4
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 6.5e-51 204.1 133 72.9
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.5e-51 204.1 133 72.9
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 8.5e-51 203.8 133 72.9
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 8.5e-51 203.8 133 73.7
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.1e-50 203.4 133 72.2
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.5e-50 203.0 133 72.9
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.5e-50 203.0 133 72.9
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 3.2e-50 201.8 133 72.2
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.2e-50 201.8 154 66.2
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 5.5e-50 201.1 133 72.2
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.5e-50 201.1 134 73.1
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-49 199.9 142 69.0
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.2e-49 199.9 134 71.6
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.6e-49 199.5 134 73.1
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 2.7e-49 198.7 133 72.2
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.7e-49 198.7 134 73.9
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 4.7e-49 198.0 135 71.9
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.7e-49 198.0 127 71.7
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 4.7e-49 198.0 133 71.4
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 6.1e-49 197.6 133 70.7
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 6.1e-49 197.6 134 73.1
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 6.1e-49 197.6 134 73.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.0e-48 196.8 134 72.4
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.0e-48 195.3 138 71.0
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.5e-47 193.0 134 69.4
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 7.5e-47 190.7 136 69.9
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 9.8e-47 190.3 134 69.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.7e-46 189.5 131 69.5
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.8e-46 188.7 164 59.8
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.8e-46 188.7 134 67.2
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-46 187.6 186 54.8
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-46 187.6 186 54.8
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 8.3e-46 187.2 96 99.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.4e-45 186.4 142 65.5
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 3.1e-45 185.3 157 62.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.2e-44 183.3 140 65.0
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.3e-43 179.1 161 59.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 8.0e-41 170.6 105 78.1
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 2.0e-39 166.0 118 67.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.7e-38 162.9 100 79.0
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 6.4e-38 161.0 101 75.2
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.1e-37 160.2 142 60.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.2e-37 158.7 139 64.0
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 4.1e-37 158.3 149 55.7
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.6e-36 156.4 129 58.9
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.8e-36 154.1 101 70.3
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.1e-34 150.2 100 72.0
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 2.5e-34 149.1 136 54.4
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.1e-33 146.0 124 58.1
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 6.2e-33 144.4 100 69.0
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 3.1e-32 142.1 108 68.5
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.9e-29 132.9 134 53.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.2e-29 132.1 108 58.3
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.9e-26 122.9 108 54.6
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.5e-26 120.6 124 50.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.2e-25 120.2 82 69.5
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.3e-24 115.9 106 61.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.3e-18 95.5 69 66.7
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 6.8e-16 87.8 112 48.2
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 1.4e-13 80.1 109 40.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.4e-13 80.1 105 47.6
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.5e-10 69.3 42 76.2
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 6.8e-08 61.2 104 36.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.2e-07 60.5 104 35.6
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 2.6e-07 59.3 59 50.8
Lalb_Chr21g0314031 Lupinus albus HOM05D004007 ORTHO05D239120 4.9e-06 55.1 34 73.5


User provided reference genes

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