Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 0.0e+00 1333.2 695 100.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 0.0e+00 1187.9 695 88.2
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 3.7e-283 978.0 695 75.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 7.1e-165 585.1 715 48.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.4e-157 558.9 691 49.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.3e-145 521.2 717 44.8
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.1e-144 516.5 709 44.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.3e-138 496.1 716 43.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 3.7e-137 493.0 717 42.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.4e-134 481.9 712 43.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.1e-128 464.9 771 37.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.2e-126 457.2 710 39.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 8.4e-126 455.3 708 40.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-125 454.5 762 38.1
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.7e-124 450.3 714 41.0
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.1e-122 444.9 673 41.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.7e-122 442.6 711 39.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 7.4e-122 442.2 705 40.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.2e-121 440.7 718 41.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.1e-120 438.3 702 40.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.8e-120 437.6 711 39.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.8e-120 437.6 707 39.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.8e-120 437.6 707 38.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.5e-119 434.5 717 37.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.3e-118 431.4 709 36.5
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.7e-118 431.0 710 40.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.9e-118 430.3 698 41.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 8.5e-118 428.7 702 40.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 8.5e-118 428.7 706 40.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.4e-117 427.9 705 40.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.9e-117 427.6 708 38.6
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.2e-117 426.4 708 39.3
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 5.5e-117 426.0 712 40.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 9.4e-117 425.2 709 38.2
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 9.4e-117 425.2 723 36.8
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.7e-116 423.7 705 40.3
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 6.1e-116 422.5 699 40.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.0e-115 420.2 712 39.6
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.9e-115 419.9 707 36.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.1e-115 419.5 712 38.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 5.1e-115 419.5 701 38.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 5.1e-115 419.5 707 38.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.7e-115 419.1 714 37.7
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 8.8e-115 418.7 701 39.1
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.1e-114 418.3 739 38.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-114 417.9 700 40.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-114 417.5 716 38.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.0e-114 417.5 706 37.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.3e-114 416.8 710 38.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.3e-114 416.8 704 38.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 4.3e-114 416.4 700 40.4
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 4.3e-114 416.4 699 39.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 4.3e-114 416.4 698 39.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.7e-113 414.5 705 40.7
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.8e-113 413.7 710 39.3
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.8e-113 413.7 697 40.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.2e-113 412.1 710 35.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-112 411.4 708 38.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.4e-112 410.6 710 38.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.3e-112 409.5 708 38.8
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 6.9e-112 409.1 710 39.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 6.9e-112 409.1 698 39.4
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.1e-112 408.7 710 38.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.2e-111 408.3 708 38.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 5.9e-111 406.0 698 39.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.9e-111 406.0 709 38.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.9e-111 406.0 710 38.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 7.7e-111 405.6 698 39.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 7.7e-111 405.6 708 35.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.3e-110 404.8 709 38.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.3e-110 404.8 715 37.9
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.2e-110 404.1 710 39.7
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.2e-110 404.1 709 38.5
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.0e-110 402.9 638 42.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 8.5e-110 402.1 710 37.7
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 8.5e-110 402.1 708 38.6
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 8.5e-110 402.1 697 40.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.1e-109 401.7 701 36.8
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.4e-109 401.4 708 38.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.9e-109 401.0 706 37.8
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.5e-109 400.6 734 35.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.2e-109 399.8 697 37.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.6e-108 397.9 718 40.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.6e-108 397.9 707 37.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.6e-108 396.7 696 38.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.1e-108 396.0 708 37.7
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.0e-107 393.7 700 37.7
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.0e-106 391.0 705 38.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 5.7e-106 389.4 725 37.7
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.3e-105 388.3 698 37.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-105 388.3 712 36.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.3e-105 388.3 726 35.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.2e-105 387.5 705 35.3
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.8e-105 387.1 717 38.8
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.8e-105 387.1 703 38.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.1e-104 383.6 708 33.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-103 381.7 706 37.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.6e-103 381.3 750 34.0
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.3e-102 378.3 704 38.1
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.7e-102 377.9 711 36.4
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.5e-101 374.8 700 34.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 5.5e-101 372.9 638 39.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 7.2e-101 372.5 635 39.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.1e-100 370.9 670 36.1
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.3e-97 359.4 712 33.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.1e-93 348.6 695 37.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 7.2e-93 345.9 570 38.8
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.8e-91 339.3 633 38.2
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-87 328.6 533 37.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 6.5e-86 322.8 705 33.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 9.5e-85 318.9 634 36.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.5e-79 300.1 519 36.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-78 297.4 523 38.8
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.7e-74 283.1 518 36.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.0e-72 276.2 532 35.0
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.0e-71 274.6 464 37.9
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.0e-70 272.3 719 31.2
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-66 258.1 517 34.4
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.4e-65 253.1 531 35.2
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.0e-63 248.1 459 34.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-57 228.4 471 34.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.0e-54 219.2 429 33.6
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.1e-51 209.1 277 48.7
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.5e-50 205.3 583 28.3
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.6e-50 204.5 237 45.6
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-50 204.1 484 31.8
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 7.6e-50 203.0 716 27.7
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.8e-49 200.7 260 46.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 7.1e-48 196.4 552 32.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-46 191.8 257 42.4
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.9e-46 190.7 418 30.4
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.5e-45 188.0 362 35.4
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.0e-35 154.1 254 44.5
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 7.6e-34 149.8 165 46.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.3e-30 139.0 140 51.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 6.7e-30 136.7 257 38.1
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.5e-29 135.6 191 51.8
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.9e-29 135.2 223 49.3
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.6e-28 132.1 172 45.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.3e-25 122.5 193 39.4
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.6e-23 115.5 291 29.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-22 112.8 140 56.4
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.9e-22 110.9 162 50.6
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 3.3e-21 107.8 103 55.3
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 7.4e-21 106.7 159 38.4
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-18 99.4 117 44.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.2e-17 95.1 136 41.9
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 2.2e-17 95.1 138 41.3
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.1e-16 90.1 122 37.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.3e-16 89.7 97 50.5
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-15 89.4 87 49.4
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 6.0e-15 87.0 71 54.9
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-14 85.9 92 48.9
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-14 85.9 89 46.1
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-14 85.9 89 46.1
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.5e-13 82.4 98 41.8
Cfa025520 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.6e-12 79.0 208 26.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 95 40.0
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.4e-11 75.9 118 39.8
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.3e-11 73.9 95 38.9
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.3e-11 73.9 95 38.9
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.0e-11 73.2 94 40.4
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.0e-10 72.0 99 41.4
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 2.0e-10 72.0 74 48.6
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.6e-10 70.1 95 37.9
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.0e-09 69.7 259 24.7
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.3e-09 69.3 72 47.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.7e-09 68.9 156 30.8
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-09 68.2 95 36.8
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-09 68.2 95 36.8
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 4.2e-08 64.3 53 56.6


User provided reference genes

Program Settings