Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 9.0e-223 776.5 376 100.0
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.4e-199 699.5 376 87.0
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.0e-178 630.2 375 75.7
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.1e-177 626.7 370 77.8
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 3.7e-176 621.7 370 77.8
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 7.7e-174 614.0 376 75.3
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.0e-173 613.6 375 74.4
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.3e-173 613.2 370 75.7
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 5.0e-173 611.3 370 74.3
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.2e-172 608.6 376 73.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.2e-172 607.4 376 74.2
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.1e-171 605.9 375 72.5
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 6.1e-171 604.4 372 73.9
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.4e-170 603.2 375 72.3
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.8e-170 602.8 370 74.3
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.3e-170 602.4 370 73.8
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 3.0e-170 602.1 372 73.4
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 8.8e-170 600.5 370 74.1
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.1e-169 600.1 370 73.5
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.1e-169 600.1 375 71.7
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 2.0e-169 599.4 375 73.3
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 9.7e-169 597.0 370 73.8
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.2e-168 595.9 377 71.6
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 3.5e-166 588.6 380 71.6
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 4.5e-166 588.2 374 71.1
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.0e-165 587.0 368 71.7
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.3e-165 586.6 370 74.6
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.2e-165 585.9 371 72.0
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 5.0e-165 584.7 371 72.5
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 2.5e-164 582.4 375 71.5
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.5e-164 582.4 375 71.7
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 4.2e-164 581.6 372 72.8
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 9.4e-164 580.5 370 71.1
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 9.4e-164 580.5 370 71.4
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 9.4e-164 580.5 370 71.4
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 9.4e-164 580.5 370 73.0
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.6e-163 579.7 370 71.1
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 4.7e-163 578.2 370 70.8
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 4.7e-163 578.2 370 70.8
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 4.7e-163 578.2 376 69.7
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 8.0e-163 577.4 370 71.4
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.4e-162 576.6 375 71.2
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 1.8e-162 576.2 375 69.3
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.3e-162 575.9 370 71.1
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.3e-162 575.9 370 71.1
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.3e-162 575.9 370 71.1
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 5.2e-162 574.7 372 71.0
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 6.8e-162 574.3 374 71.4
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.6e-161 572.4 369 72.6
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 9.8e-161 570.5 387 68.2
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.7e-160 569.7 370 70.3
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 3.7e-160 568.5 384 68.0
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.1e-159 567.0 371 70.1
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.2e-158 563.5 372 70.4
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.6e-158 563.1 408 66.9
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.6e-158 563.1 368 70.7
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.7e-158 562.4 371 69.5
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.7e-158 562.4 371 69.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 2.7e-158 562.4 340 74.1
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 3.5e-158 562.0 367 70.3
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.2e-157 559.3 372 69.1
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.2e-155 553.5 375 68.8
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 3.0e-154 548.9 376 67.3
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.2e-152 542.7 361 70.6
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.9e-152 541.6 368 69.0
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 4.9e-152 541.6 389 66.6
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 4.9e-152 541.6 368 67.9
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 2.0e-150 536.2 381 68.2
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 1.7e-149 533.1 330 75.2
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.1e-148 530.4 375 66.9
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.3e-148 528.9 402 62.2
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.2e-148 528.5 376 66.0
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 2.1e-147 526.2 328 73.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.6e-147 525.4 353 69.1
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 6.1e-147 524.6 369 65.3
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.0e-145 519.6 381 65.4
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 9.8e-145 517.3 253 95.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.7e-144 516.5 384 64.1
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.8e-143 513.1 336 70.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 4.1e-143 511.9 371 64.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.6e-142 508.4 380 64.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.3e-141 506.9 334 69.8
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.3e-141 506.1 318 73.0
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 5.0e-141 505.0 356 66.9
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 5.0e-141 505.0 376 63.8
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.9e-140 503.1 370 63.2
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.6e-139 498.8 375 63.2
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 4.7e-139 498.4 376 62.2
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.8e-138 496.5 366 64.8
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.0e-137 493.0 363 64.7
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 5.8e-137 491.5 376 62.2
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 5.8e-137 491.5 375 62.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 9.8e-137 490.7 376 62.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.7e-136 490.0 371 63.3
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 3.7e-136 488.8 376 61.7
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 3.2e-135 485.7 375 61.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.2e-134 483.8 371 62.0
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.2e-134 483.8 281 76.9
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.2e-134 483.8 372 61.8
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 2.0e-134 483.0 371 62.0
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 7.8e-134 481.1 371 61.5
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.3e-133 479.6 371 61.5
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.3e-133 479.6 378 60.6
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.1e-132 477.2 377 60.2
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 3.1e-130 469.2 369 62.3
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 4.9e-128 461.8 353 63.2
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 5.4e-127 458.4 374 58.0
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 2.3e-125 453.0 253 79.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 5.1e-125 451.8 370 58.6
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 5.1e-125 451.8 370 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 4.7e-123 445.3 365 58.4
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 3.4e-121 439.1 257 77.4
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 7.6e-121 438.0 382 54.2
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.6e-121 438.0 378 56.6
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.7e-118 429.5 375 57.6
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.5e-116 423.7 382 52.9
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.6e-115 419.1 376 51.9
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 6.4e-112 408.3 281 66.5
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 4.2e-111 405.6 376 51.6
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.4e-103 379.8 372 52.4
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.0e-98 362.5 220 73.2
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.5e-97 360.5 306 57.5
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 4.3e-84 315.8 309 50.5
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 5.3e-82 308.9 530 34.3
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 7.7e-73 278.5 219 62.1
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.2e-71 273.1 212 64.6
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.2e-67 260.4 159 74.2
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.4e-66 257.7 271 48.7
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.1e-66 256.5 365 38.1
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.9e-66 255.4 143 79.7
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.7e-59 234.2 216 54.2
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 7.2e-55 218.8 134 71.6
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.0e-49 200.7 150 64.0
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 2.2e-48 197.2 145 63.4
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.2e-43 180.6 109 69.7
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-42 178.3 147 59.9
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 6.1e-38 162.5 232 34.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.9e-31 141.0 93 65.6
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 8.0e-30 135.6 285 28.8
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 3.1e-21 107.1 57 80.7
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.6e-20 104.0 171 39.2
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.7e-16 91.3 65 64.6
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.3e-15 86.7 52 69.2
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 9.5e-15 85.5 64 57.8
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.6e-12 77.4 57 66.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.3e-11 75.1 72 48.6
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.5e-07 60.8 48 56.2
arahy.Tifrunner.gnm1.ann1.Y4W2TZ Arachis hypogaea HOM05D000526 ORTHO05D000956 6.2e-06 56.2 178 24.7
arahy.Tifrunner.gnm1.ann1.52GVK1 Arachis hypogaea HOM05D000526 ORTHO05D000956 8.1e-06 55.8 178 24.2
Glyma.08G228100 Glycine max HOM05D000526 ORTHO05D000956 8.1e-06 55.8 178 24.2


User provided reference genes

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