Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 9.3e-167 590.1 294 100.0
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 9.7e-148 526.9 296 89.5
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 76.4
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 76.4
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 3.3e-124 448.7 292 74.7
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 9.7e-124 447.2 292 74.3
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.7e-123 446.4 292 74.0
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 74.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 74.0
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.8e-123 444.9 292 74.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 4.8e-123 444.9 292 73.6
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 8.2e-123 444.1 292 74.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.1e-122 443.7 292 74.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.4e-122 442.6 294 72.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 73.3
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.5e-121 438.7 292 74.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.5e-121 438.3 292 72.3
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 5.9e-121 438.0 292 73.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 5.9e-121 438.0 292 72.9
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.3e-120 436.8 294 73.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.3e-120 436.8 294 71.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.7e-120 436.4 294 73.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.7e-120 436.4 294 71.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.7e-120 436.4 294 73.8
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.9e-120 435.6 292 71.2
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 6.5e-120 434.5 293 73.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.5e-120 434.5 292 72.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-119 433.3 292 73.3
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.9e-119 433.0 292 72.3
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.5e-119 432.6 292 71.2
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 3.2e-119 432.2 292 72.3
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.2e-119 431.8 293 72.7
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.6e-118 429.9 294 71.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.7e-118 429.1 292 72.3
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.7e-118 429.1 323 66.6
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 8.0e-118 427.6 294 71.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.0e-117 427.2 306 68.3
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-117 426.4 294 70.1
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 4.0e-117 425.2 292 72.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 4.0e-117 425.2 284 71.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.0e-117 425.2 292 71.6
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 8.8e-117 424.1 295 71.9
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.2e-116 423.7 292 71.6
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.2e-116 423.7 292 70.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.2e-116 423.7 292 72.3
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.0e-116 422.9 294 71.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.0e-116 422.9 292 71.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.4e-116 422.2 273 75.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-116 422.2 295 71.5
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.4e-116 421.8 292 70.5
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 9.8e-116 420.6 294 70.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 71.6
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.2e-115 419.5 292 71.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.8e-115 419.1 321 66.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.3e-115 417.5 292 70.9
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.1e-114 417.2 326 65.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.8e-114 416.4 292 70.5
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.4e-114 416.0 292 70.5
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.4e-114 416.0 293 68.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.1e-114 415.6 271 73.8
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.1e-114 415.2 292 71.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 5.4e-114 414.8 292 70.2
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 9.1e-114 414.1 291 70.8
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.2e-113 413.7 292 70.2
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.6e-113 413.3 294 69.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.6e-113 413.3 292 68.8
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.7e-113 412.5 292 69.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 3.5e-113 412.1 292 69.9
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.5e-113 411.8 292 69.2
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-112 410.2 294 69.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.8e-112 408.7 294 68.7
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 5.0e-112 408.3 292 69.9
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 6.5e-112 407.9 292 69.5
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.5e-111 406.8 294 69.4
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.2e-111 405.6 293 70.0
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 4.2e-111 405.2 292 69.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.5e-111 404.8 292 68.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 9.4e-111 404.1 293 70.0
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.6e-110 403.3 295 67.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.1e-110 401.4 292 70.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.1e-110 401.4 294 67.7
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-109 400.2 312 65.4
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.8e-109 399.8 292 67.8
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.8e-109 399.8 292 68.8
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-109 399.1 314 65.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 6.8e-109 397.9 293 68.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-107 393.3 292 67.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.2e-107 392.9 284 69.7
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 2.8e-107 392.5 296 67.6
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 7.0e-106 387.9 292 66.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 7.0e-106 387.9 292 66.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 7.0e-106 387.9 322 61.2
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 7.0e-106 387.9 298 68.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 9.2e-106 387.5 237 78.9
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.8e-104 382.1 292 67.8
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.0e-104 381.7 292 66.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.0e-104 381.7 292 66.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 5.0e-104 381.7 292 66.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 6.6e-104 381.3 292 66.8
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 8.6e-104 380.9 292 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.1e-103 380.6 293 65.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.1e-103 380.6 292 67.1
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.9e-103 379.8 294 65.0
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 4.3e-103 378.6 292 65.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 7.3e-103 377.9 294 66.3
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.8e-102 375.9 292 67.5
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.4e-101 373.6 294 65.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 5.7e-100 368.2 231 76.2
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.7e-99 366.7 389 53.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-99 366.3 295 65.4
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-98 363.6 292 64.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-98 363.6 292 64.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 5.4e-98 361.7 292 62.7
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.6e-97 360.1 292 64.4
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 8.6e-96 354.4 226 74.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 5.8e-92 341.7 293 61.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.9e-91 338.6 292 59.6
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 7.8e-89 331.3 299 57.9
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.3e-88 329.7 287 60.6
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.9e-88 328.9 188 81.9
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 5.0e-88 328.6 242 69.0
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-85 320.5 260 63.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.0e-85 318.9 263 63.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.0e-84 316.6 288 56.9
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.7e-83 313.5 211 73.9
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 3.7e-83 312.4 296 55.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.0e-80 302.8 292 56.8
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 7.3e-79 298.1 297 53.5
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.0e-76 290.0 298 52.7
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.6e-76 288.1 189 71.4
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.7e-73 279.6 200 70.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.5e-71 273.1 177 70.6
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 5.6e-63 245.4 297 47.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.2e-58 229.6 294 45.6
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.5e-52 210.7 295 43.7
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.5e-52 210.7 295 43.7
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.5e-52 210.7 295 43.7
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.2e-49 201.1 266 49.2
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-42 176.0 105 79.0
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.3e-40 171.0 231 45.5
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.8e-40 170.6 102 77.5
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-36 157.9 154 54.5
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.0e-36 157.1 153 56.2
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.9e-36 155.6 153 55.6
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.9e-36 155.6 153 55.6
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 7.9e-33 145.2 85 81.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.2e-30 137.1 194 39.7
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.3e-29 132.5 110 61.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.2e-26 123.2 107 58.9
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.4e-24 117.9 73 75.3
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.4e-24 117.9 73 75.3
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 5.1e-24 115.9 72 75.0
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.4e-21 107.8 68 73.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 4.1e-21 106.3 93 62.4
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.5e-20 104.4 191 38.2
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 3.0e-16 90.1 128 40.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.5e-15 87.8 60 66.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 2.6e-12 77.0 56 64.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.3e-11 74.7 262 27.1
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.2e-11 73.9 86 47.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.0e-08 65.1 55 54.5


User provided reference genes

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