Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215770 Zea mays HOM05D000361 ORTHO05D442938 8.5e-41 169.9 83 100.0
Zm00001eb243240 Zea mays HOM05D000361 ORTHO05D444302 8.5e-41 169.9 83 100.0
Zm00001eb148840 Zea mays HOM05D000361 ORTHO05D442967 3.2e-40 167.9 83 98.8
Zm00001eb290510 Zea mays HOM05D000361 ORTHO05D007313 3.2e-40 167.9 83 98.8
Zm00001eb342210 Zea mays HOM05D000361 ORTHO05D444829 3.2e-40 167.9 83 98.8
Zm00001eb130030 Zea mays HOM05D000361 ORTHO05D443507 7.2e-40 166.8 83 97.6
Zm00001eb351990 Zea mays HOM05D000361 ORTHO05D007313 1.6e-39 165.6 83 96.4
Os05g0476200 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D007313 4.6e-39 164.1 83 96.4
MBI10_g21116_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D007313 1.1e-21 106.3 86 66.3
Lalb_Chr07g0188661 Lupinus albus HOM05D000361 ORTHO05D007313 9.1e-19 96.7 85 55.3
VMungo1309G0878 Vigna mungo HOM05D000361 ORTHO05D007313 9.1e-19 96.7 85 60.0
Aqoxy1G01748 Aquilegia oxysepala HOM05D000361 ORTHO05D007313 1.2e-18 96.3 84 60.7
FvH4_3g05860 Fragaria vesca HOM05D000361 ORTHO05D007313 1.2e-18 96.3 84 59.5
FAN11G2321 Fragaria x ananassa HOM05D000736 ORTHO05D007313 1.2e-18 96.3 84 59.5
FAN16G3703 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.2e-18 96.3 84 59.5
FAN21G3930 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.2e-18 96.3 84 59.5
RcHm_v2.0_Chr5g0013661 Rosa chinensis HOM05D000361 ORTHO05D007313 1.2e-18 96.3 84 59.5
Thecc.06G152900 Theobroma cacao HOM05D000361 ORTHO05D007313 3.5e-18 94.7 85 60.0
TAR626G0055 Trochodendron aralioides HOM05D000361 ORTHO05D007313 3.5e-18 94.7 85 60.0
Lj4g0025504 Lotus japonicus HOM05D000361 ORTHO05D007313 4.5e-18 94.4 85 57.6
MD05G1286600 Malus domestica HOM05D000361 ORTHO05D007313 5.9e-18 94.0 84 57.1
Manes.15G120100 Manihot esculenta HOM05D000361 ORTHO05D007313 5.9e-18 94.0 85 58.8
Manes.17G068400 Manihot esculenta HOM05D000361 ORTHO05D007313 5.9e-18 94.0 85 58.8
Duzib192G0960 Durio zibethinus HOM05D000361 ORTHO05D007313 7.7e-18 93.6 85 60.0
FAN25G1702 Fragaria x ananassa HOM05D000361 ORTHO05D007313 7.7e-18 93.6 83 57.8
arahy.Tifrunner.gnm1.ann1.7J68PP Arachis hypogaea HOM05D000361 ORTHO05D007313 1.0e-17 93.2 85 56.5
arahy.Tifrunner.gnm1.ann1.I8W9P3 Arachis hypogaea HOM05D000361 ORTHO05D007313 1.0e-17 93.2 85 56.5
AUR62027610 Chenopodium quinoa HOM05D000361 ORTHO05D007313 1.0e-17 93.2 84 57.1
QL05p058975 Quercus lobata HOM05D000361 ORTHO05D007313 1.0e-17 93.2 84 60.7
Hund21521 Selenicereus undatus HOM05D000361 ORTHO05D007313 1.0e-17 93.2 85 58.8
THA.LOC104806124 Tarenaya hassleriana HOM05D000361 ORTHO05D007313 1.3e-17 92.8 83 57.8
Duzib160G0935 Durio zibethinus HOM05D000361 ORTHO05D007313 1.7e-17 92.4 85 58.8
Phvul.002G194200 Phaseolus vulgaris HOM05D000361 ORTHO05D007313 1.7e-17 92.4 85 57.6
Prupe.4G078300 Prunus persica HOM05D000361 ORTHO05D007313 1.7e-17 92.4 84 56.0
Sc17g0004990 Simmondsia chinensis HOM05D000361 ORTHO05D007313 1.7e-17 92.4 84 59.5
Cpa.g.sc166.27 Carica papaya HOM05D000361 ORTHO05D007313 2.2e-17 92.0 85 58.8
Dinv32273 Davidia involucrata HOM05D000361 ORTHO05D007313 2.2e-17 92.0 85 56.5
Eucgr.E02391 Eucalyptus grandis HOM05D000361 ORTHO05D007313 2.9e-17 91.7 83 55.4
Gohir.A10G039500 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.9e-17 91.7 85 57.6
Gohir.D10G040300 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.9e-17 91.7 85 57.6
Gorai.011G042400 Gossypium raimondii HOM05D000361 ORTHO05D007313 2.9e-17 91.7 85 57.6
CSS0047698 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007313 3.8e-17 91.3 85 56.5
CDE02G2269 Ceratophyllum demersum HOM05D000361 ORTHO05D007313 3.8e-17 91.3 83 59.0
Sabra04G0086300 Salix brachista HOM05D000361 ORTHO05D007313 3.8e-17 91.3 84 58.3
Gohir.D05G152200 Gossypium hirsutum HOM05D000361 ORTHO05D007313 5.0e-17 90.9 85 56.5
Gorai.009G156300 Gossypium raimondii HOM05D000361 ORTHO05D007313 5.0e-17 90.9 85 56.5
Potri.004G131600 Populus trichocarpa HOM05D000361 ORTHO05D007313 5.0e-17 90.9 84 57.1
GSVIVG01021426001 Vitis vinifera HOM05D000361 ORTHO05D007313 5.0e-17 90.9 84 56.0
Glyma.08G084400 Glycine max HOM05D000361 ORTHO05D007313 8.5e-17 90.1 85 55.3
MD10G1264100 Malus domestica HOM05D000361 ORTHO05D007313 8.5e-17 90.1 84 54.8
vmacro22572 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 8.5e-17 90.1 85 54.1
EL10As10g23969 Beta vulgaris HOM05D000361 ORTHO05D007313 1.1e-16 89.7 84 56.0
AUR62030235 Chenopodium quinoa HOM05D000361 ORTHO05D007313 1.1e-16 89.7 84 56.0
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 1.5e-16 89.4 84 56.0
Ca_18269_v3 Cicer arietinum L. HOM05D000361 ORTHO05D007313 1.5e-16 89.4 85 56.5
Hma1.2p1_0259F.1_g104280 Hydrangea macrophylla HOM05D000361 ORTHO05D007313 1.5e-16 89.4 85 54.1
Medtr4g096700 Medicago truncatula HOM05D000361 ORTHO05D007313 1.5e-16 89.4 85 56.5
Psat7g090360 Pisum sativum HOM05D000361 ORTHO05D007313 1.5e-16 89.4 85 56.5
Ciclev10017750m.g Citrus clementina HOM05D000361 ORTHO05D007313 1.9e-16 89.0 85 56.5
COL.COLO4_38291 Corchorus olitorius HOM05D000361 ORTHO05D007313 1.9e-16 89.0 84 54.8
Haze_05571 Corylus avellana HOM05D000361 ORTHO05D007313 1.9e-16 89.0 85 57.6
Nn3g20692 Nelumbo nucifera HOM05D000361 ORTHO05D007313 1.9e-16 89.0 84 57.1
SalBow7G1169 Salvia bowleyana HOM05D000361 ORTHO05D007313 1.9e-16 89.0 84 58.3
ATR0693G231 Amborella trichopoda HOM05D000361 ORTHO05D007313 2.5e-16 88.6 87 56.3
TWI73G0468 Tripterygium wilfordii HOM05D000361 ORTHO05D007313 2.5e-16 88.6 85 58.8
ClCG01G024510 Citrullus lanatus HOM05D000361 ORTHO05D007313 4.2e-16 87.8 84 57.1
Gohir.A05G149600 Gossypium hirsutum HOM05D000361 ORTHO05D007313 4.2e-16 87.8 85 55.3
SGA_v2.0_scaffold51G18635 Striga asiatica HOM05D000361 ORTHO05D007313 4.2e-16 87.8 84 58.3
MSTRG.14768 Avicennia marina HOM05D000361 ORTHO05D007313 5.5e-16 87.4 84 57.1
PGR042G0058 Punica granatum HOM05D000361 ORTHO05D007313 5.5e-16 87.4 85 55.3
Glyma.05G129700 Glycine max HOM05D000361 ORTHO05D007313 7.2e-16 87.0 85 52.9
Oeu052381.3 Olea europaea HOM05D000361 ORTHO05D007313 7.2e-16 87.0 85 56.5
Rhsim13G0194100 Rhododendron simsii HOM05D000361 ORTHO05D007313 7.2e-16 87.0 85 51.8
CiPaw.10G092900 Carya illinoinensis HOM05D000361 ORTHO05D007313 9.4e-16 86.7 85 56.5
Actinidia16720 Actinidia chinensis HOM05D000361 ORTHO05D007313 1.2e-15 86.3 85 52.9
Sed0015619 Sechium edule HOM05D000361 ORTHO05D007313 1.2e-15 86.3 84 56.0
DCAR_027944 Daucus carota HOM05D000361 ORTHO05D007313 1.6e-15 85.9 85 54.1
SGA_v2.0_scaffold106G30638 Striga asiatica HOM05D000361 ORTHO05D007313 1.6e-15 85.9 84 57.1
MELO3C007144.2 Cucumis melo HOM05D000361 ORTHO05D007313 2.1e-15 85.5 84 56.0
Lj1A1185G63 Lonicera japonica HOM05D000361 ORTHO05D007313 2.7e-15 85.1 84 54.8
Solyc02g070780.4 Solanum lycopersicum HOM05D000361 ORTHO05D007313 2.7e-15 85.1 84 53.6
Sopen02g019850 Solanum pennellii HOM05D000361 ORTHO05D007313 2.7e-15 85.1 84 53.6
PGSC0003DMG400008308 Solanum tuberosum HOM05D000361 ORTHO05D007313 2.7e-15 85.1 84 53.6
CsaV3_6G051630 Cucumis sativus L. HOM05D000361 ORTHO05D007313 3.6e-15 84.7 84 56.0
HanXRQChr04g0118381 Helianthus annuus HOM05D000361 ORTHO05D007313 3.6e-15 84.7 85 54.1
CANSAT35G0708 Cannabis sativa HOM05D000361 ORTHO05D007313 4.7e-15 84.3 85 54.1
CAN.G650.47 Capsicum annuum HOM05D000361 ORTHO05D007313 4.7e-15 84.3 84 53.6
Cc00_g11120 Coffea canephora HOM05D000361 ORTHO05D007313 4.7e-15 84.3 83 54.2
SEGI_24709 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 4.7e-15 84.3 92 53.3
SEGI_26759 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 4.7e-15 84.3 92 53.3
Peaxi162Scf00796g00120 Petunia axillaris HOM05D000361 ORTHO05D007313 6.1e-15 84.0 84 53.6
unitig_21.g20642 Utricularia gibba HOM05D000361 ORTHO05D007313 6.1e-15 84.0 83 54.2
CARHR175520 Cardamine hirsuta HOM05D000361 ORTHO05D007313 8.0e-15 83.6 83 56.6
Atru.chr10.1316 Acer truncatum HOM05D000361 ORTHO05D007313 1.0e-14 83.2 85 56.5
ECA236G2001 Erigeron canadensis HOM05D000361 ORTHO05D007313 1.0e-14 83.2 84 53.6
Migut.H01371 Erythranthe guttata HOM05D000361 ORTHO05D007313 1.4e-14 82.8 87 57.5
PSO675G5964 Papaver somniferum HOM05D000361 ORTHO05D007313 2.3e-14 82.0 83 53.0
Lj4g0014780 Lotus japonicus HOM05D000361 ORTHO05D007313 3.0e-14 81.6 85 52.9
Mapoly0001s0105 Marchantia polymorpha HOM05D000361 ORTHO05D007313 3.0e-14 81.6 89 53.9
Nitab4.5_0001040g0140 Nicotiana tabacum HOM05D000361 ORTHO05D007313 3.0e-14 81.6 83 51.8
Pp3c20_6190 Physcomitrium patens HOM05D000361 ORTHO05D007313 3.0e-14 81.6 86 52.3
vmacro09958 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 4.0e-14 81.3 85 52.9
HPP92_019175 Vanilla planifolia HOM05D000106 ORTHO05D001887 4.0e-14 81.3 50 72.0
BcaC06g31485 Brassica carinata HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 53.0
A06p46030 Brassica napus HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 53.0
C07p29500 Brassica napus HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 53.0
BolC7t43499H Brassica oleracea HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 53.0
BraA06t27467Z Brassica rapa HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 53.0
Thhalv10000786m.g Eutrema salsugineum HOM05D000361 ORTHO05D007313 8.8e-14 80.1 83 54.2
PSO541G6449 Papaver somniferum HOM05D000361 ORTHO05D007313 1.2e-13 79.7 83 53.0
Nitab4.5_0018875g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007313 1.5e-13 79.3 83 50.6
Sp2g11130 Schrenkiella parvula HOM05D000361 ORTHO05D007313 1.5e-13 79.3 83 54.2
BcaC03g16842 Brassica carinata HOM05D000361 ORTHO05D007313 2.0e-13 79.0 83 53.0
A02p29810 Brassica napus HOM05D000361 ORTHO05D007313 2.0e-13 79.0 84 52.4
C02p47220 Brassica napus HOM05D000361 ORTHO05D007313 2.0e-13 79.0 83 53.0
BolC2t10766H Brassica oleracea HOM05D000361 ORTHO05D007313 2.0e-13 79.0 83 53.0
BraA02t08002Z Brassica rapa HOM05D000361 ORTHO05D007313 2.0e-13 79.0 84 52.4
Lsat_1_v5_gn_7_30521 Lactuca sativa HOM05D000361 ORTHO05D007313 2.0e-13 79.0 83 50.6
Aa31LG9G6610 Aethionema arabicum HOM05D000361 ORTHO05D007313 4.4e-13 77.8 83 54.2
Cc08_g06660 Coffea canephora HOM05D000361 ORTHO05D007313 9.8e-13 76.6 83 49.4
CBR_g40405 Chara braunii HOM05D000361 ORTHO05D007313 6.3e-12 73.9 86 47.7
AL8G12180 Arabidopsis lyrata HOM05D000361 ORTHO05D007313 1.4e-11 72.8 83 53.0
SMO118G0248 Selaginella moellendorffii HOM05D000361 ORTHO05D007313 2.4e-11 72.0 91 45.1
RcHm_v2.0_Chr5g0013601 Rosa chinensis HOM05D000361 ORTHO05D007313 3.1e-11 71.6 83 49.4
AT5G46280 Arabidopsis thaliana HOM05D000361 ORTHO05D007313 9.1e-11 70.1 83 51.8
Carub.0008s0163 Capsella rubella HOM05D000361 ORTHO05D007313 1.3e-09 66.2 83 49.4
DCAR_005114 Daucus carota HOM05D000361 ORTHO05D007313 2.1e-07 58.9 85 43.5
vmacro22573 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 5.2e-06 54.3 82 41.5


User provided reference genes

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