Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 1.1e-203 713.0 344 100.0
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 2.7e-194 681.8 370 91.1
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 9.6e-155 550.4 370 71.9
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 8.4e-119 431.0 367 55.6
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 4.2e-118 428.7 366 54.1
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 4.6e-117 425.2 368 53.3
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 1.3e-116 423.7 365 53.7
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 3.0e-116 422.5 368 54.3
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 2.5e-115 419.5 364 54.4
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 5.7e-115 418.3 363 55.1
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 1.6e-114 416.8 367 54.2
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 4.8e-114 415.2 365 53.2
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 8.2e-114 414.5 366 54.9
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 3.4e-112 409.1 372 52.2
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 5.9e-112 408.3 367 53.4
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 7.7e-112 407.9 367 51.5
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 7.7e-112 407.9 365 51.8
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 6.5e-111 404.8 365 52.1
Zm00001eb072150 Zea mays HOM05D003914 ORTHO05D001189 6.5e-111 404.8 212 93.4
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 1.1e-110 404.1 368 52.7
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 1.4e-110 403.7 367 51.2
Zm00001eb037140 Zea mays HOM05D003914 ORTHO05D001189 1.4e-110 403.7 212 92.9
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 1.9e-110 403.3 365 52.1
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 1.9e-110 403.3 371 50.9
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 3.2e-110 402.5 364 52.5
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 3.2e-110 402.5 365 50.7
Zm00001eb104230 Zea mays HOM05D003914 ORTHO05D001189 7.2e-110 401.4 215 92.1
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 1.6e-109 400.2 365 51.2
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 3.6e-109 399.1 364 51.1
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 3.6e-109 399.1 368 50.8
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 6.1e-109 398.3 368 51.9
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 6.1e-109 398.3 368 51.4
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 1.4e-108 397.1 364 51.4
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 1.4e-108 397.1 365 51.2
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 1.8e-108 396.7 365 51.5
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 3.9e-108 395.6 367 51.2
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 5.1e-108 395.2 368 51.4
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 5.1e-108 395.2 365 51.2
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 6.7e-108 394.8 365 52.1
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 1.1e-107 394.0 368 51.4
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 2.0e-107 393.3 365 51.5
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 2.0e-107 393.3 368 51.1
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 2.0e-107 393.3 372 50.0
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 4.3e-107 392.1 365 51.5
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 5.7e-107 391.7 365 51.2
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 7.4e-107 391.3 366 50.5
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 1.3e-106 390.6 368 51.1
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 1.3e-106 390.6 368 51.1
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 2.2e-106 389.8 376 50.8
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.2e-106 389.8 364 50.8
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 2.2e-106 389.8 365 51.0
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 3.7e-106 389.0 379 49.3
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 6.3e-106 388.3 365 52.3
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 6.3e-106 388.3 365 52.1
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 6.3e-106 388.3 365 51.2
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 6.3e-106 388.3 365 51.2
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 1.1e-105 387.5 356 52.0
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 1.1e-105 387.5 366 50.3
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 1.8e-105 386.7 365 52.6
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 1.8e-105 386.7 365 52.6
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 2.4e-105 386.3 365 51.8
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 3.1e-105 386.0 365 52.1
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 4.1e-105 385.6 365 52.1
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 4.1e-105 385.6 365 50.4
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 6.9e-105 384.8 365 51.0
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 6.9e-105 384.8 365 51.0
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 9.1e-105 384.4 365 50.4
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 9.1e-105 384.4 365 51.0
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 1.2e-104 384.0 368 50.3
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 1.5e-104 383.6 365 51.8
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 1.5e-104 383.6 365 50.4
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 3.4e-104 382.5 365 51.5
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 3.4e-104 382.5 365 50.4
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 4.5e-104 382.1 365 50.1
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 5.9e-104 381.7 364 49.7
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 1.0e-103 380.9 368 50.5
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 1.3e-103 380.6 365 51.2
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 1.3e-103 380.6 365 49.9
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 6.5e-103 378.3 365 51.2
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 6.5e-103 378.3 365 51.2
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 8.5e-103 377.9 365 51.0
Zm00001eb336550 Zea mays HOM05D003914 ORTHO05D001189 2.5e-102 376.3 190 97.4
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 9.4e-102 374.4 371 49.9
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 1.6e-101 373.6 345 52.2
Zm00001eb075600 Zea mays HOM05D003914 ORTHO05D001189 1.6e-101 373.6 190 96.8
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 2.1e-101 373.2 367 49.3
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 2.7e-101 372.9 397 47.4
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 2.7e-101 372.9 365 50.1
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 6.1e-101 371.7 365 48.8
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 3.9e-100 369.0 364 49.5
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 5.1e-100 368.6 368 49.2
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 2.6e-99 366.3 364 49.2
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 3.3e-99 365.9 364 48.6
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 4.4e-99 365.5 368 48.9
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 2.2e-98 363.2 364 48.9
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 1.2e-96 357.5 365 47.4
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 2.6e-96 356.3 367 46.9
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 1.7e-95 353.6 354 47.7
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 2.2e-95 353.2 469 39.4
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 2.9e-95 352.8 428 43.5
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 6.5e-95 351.7 367 47.4
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 2.0e-91 340.1 274 56.9
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 3.3e-91 339.3 396 43.9
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 6.3e-90 335.1 369 44.4
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 6.8e-84 315.1 311 47.6
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 1.4e-81 307.4 311 46.9
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 2.4e-81 306.6 310 49.4
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 2.4e-81 306.6 268 53.7
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 5.0e-79 298.9 314 47.5
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 2.5e-70 270.0 228 55.7
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 1.2e-69 267.7 373 38.6
Zm00001eb052930 Zea mays HOM05D003914 ORTHO05D006988 1.2e-69 267.7 137 97.1
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 3.0e-68 263.1 306 44.4
Zm00001eb059520 Zea mays HOM05D003914 ORTHO05D001189 2.0e-67 260.4 134 96.3
Zm00001eb421450 Zea mays HOM05D003914 ORTHO05D001189 2.0e-67 260.4 134 96.3
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 3.4e-67 259.6 371 38.8
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 1.7e-66 257.3 323 44.0
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 7.8e-64 248.4 224 51.3
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 5.6e-62 242.3 370 37.3
Cpa.g.sc2.93 Carica papaya HOM05D003914 ORTHO05D001189 1.6e-61 240.7 210 52.4
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 5.8e-59 232.3 207 53.6
Actinidia18235 Actinidia chinensis HOM05D003914 ORTHO05D001189 2.9e-58 229.9 191 52.4
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 2.4e-57 226.9 368 34.2
Zm00001eb236280 Zea mays HOM05D003914 ORTHO05D001189 1.0e-55 221.5 134 85.1
Zm00001eb206280 Zea mays HOM05D003914 ORTHO05D001189 7.3e-54 215.3 210 57.1
GSVIVG01017553001 Vitis vinifera HOM05D003914 ORTHO05D001189 5.2e-52 209.1 193 49.7
Zm00001eb154890 Zea mays HOM05D003914 ORTHO05D001189 2.2e-50 203.8 105 96.2
Oeu008404.1 Olea europaea HOM05D003914 ORTHO05D001189 8.3e-50 201.8 184 52.7
Zm00001eb386790 Zea mays HOM05D003914 ORTHO05D001189 7.1e-49 198.7 105 94.3
MD16G1257100 Malus domestica HOM05D003914 ORTHO05D001189 1.2e-48 198.0 187 51.9
ATR0564G275 Amborella trichopoda HOM05D003914 ORTHO05D001189 1.6e-48 197.6 179 51.4
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 2.6e-35 153.7 368 26.1
Zm00001eb386800 Zea mays HOM05D003914 ORTHO05D001189 4.4e-35 152.9 106 74.5
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 4.9e-34 149.4 182 44.0
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 3.3e-30 136.7 174 40.8
HanXRQChr02g0034921 Helianthus annuus HOM05D003914 ORTHO05D001189 6.9e-28 129.0 124 46.0
Nn1g04288 Nelumbo nucifera HOM05D003914 ORTHO05D001189 2.9e-26 123.6 113 48.7
Pp3c26_7670 Physcomitrium patens HOM05D003914 ORTHO05D001189 2.3e-23 114.0 150 39.3
HPP92_024664 Vanilla planifolia HOM05D003914 ORTHO05D001189 3.3e-22 110.2 73 63.0
SHI11253 Sapria himalayana HOM05D003914 ORTHO05D001189 1.3e-21 108.2 135 42.2
Atru.chr10.2396 Acer truncatum HOM05D003914 ORTHO05D001189 2.8e-21 107.1 92 53.3
CARHR073830 Cardamine hirsuta HOM05D003914 ORTHO05D001189 4.6e-16 89.7 87 49.4
SalBow5G3025 Salvia bowleyana HOM05D003914 ORTHO05D001189 2.8e-13 80.5 100 44.0
Cre02.g086887 Chlamydomonas reinhardtii HOM05D003914 ORTHO05D001189 1.1e-06 58.5 113 29.2
Nn1g04287 Nelumbo nucifera HOM05D003914 ORTHO05D001189 1.1e-06 58.5 41 61.0


User provided reference genes

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