Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 3001.1 1501 100.0
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1397.1 1513 49.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1338.9 1521 47.9
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1335.5 1510 47.7
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1323.1 1523 46.8
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1317.0 1515 47.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1296.2 1517 47.0
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1291.2 1504 46.3
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1276.9 1511 45.1
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1274.6 1542 45.7
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1264.2 1526 46.1
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1260.7 1516 45.1
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1258.4 1516 45.3
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1252.3 1556 45.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1249.2 1509 44.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1245.7 1468 45.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1242.3 1542 44.9
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1240.3 1515 44.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1234.2 1511 44.8
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1234.2 1510 44.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1231.1 1514 45.3
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1226.5 1523 45.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1205.7 1521 43.9
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1203.7 1507 44.7
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1201.0 1517 43.8
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1199.1 1528 44.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1196.4 1525 45.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1193.7 1503 44.2
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1189.9 1508 43.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1189.5 1512 43.4
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1189.5 1507 44.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1187.2 1530 44.4
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1185.6 1515 44.6
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1182.5 1516 43.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1180.6 1507 43.9
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1179.5 1522 43.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1177.9 1510 44.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1177.5 1519 42.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1176.0 1620 41.7
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1175.2 1507 43.2
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1174.8 1511 43.7
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1171.4 1534 42.8
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1170.2 1512 43.7
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1164.1 1525 42.3
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1164.1 1525 42.3
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1163.3 1512 42.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1162.9 1506 43.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1162.5 1520 43.2
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1157.5 1506 44.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1151.7 1443 43.7
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1147.5 1507 43.3
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1146.0 1512 43.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1142.5 1509 42.7
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1140.2 1515 41.7
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1139.8 1539 41.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1139.4 1504 42.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1132.9 1504 42.7
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1117.8 1517 42.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1110.1 1500 42.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1105.5 1541 40.6
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1102.0 1500 41.1
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1098.2 1510 42.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1085.1 1510 42.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1081.2 1292 44.7
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1075.5 1507 41.2
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.0e-311 1073.9 1513 41.0
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.2e-310 1070.5 1520 41.3
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 7.8e-310 1067.8 1501 41.0
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 2.1e-307 1059.7 1513 41.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 1.2e-305 1053.9 1509 41.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 7.5e-305 1051.2 1523 41.2
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 2.4e-303 1046.2 1513 41.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 3.5e-302 1042.3 1550 40.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 4.6e-302 1042.0 1513 41.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 1.2e-299 1033.9 1545 40.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 3.6e-299 1032.3 1506 41.0
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 8.1e-299 1031.2 1212 46.0
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.3e-298 1029.6 1242 44.1
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 4.0e-298 1028.9 1451 40.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 5.2e-298 1028.5 1510 41.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 4.4e-289 998.8 1554 38.8
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 9.2e-287 991.1 1760 34.8
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-284 984.2 1553 38.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.2e-280 969.9 1535 38.6
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.7e-277 960.3 1163 45.7
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 1.3e-269 934.1 1288 42.6
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.1e-266 924.5 1383 39.5
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.1e-263 914.4 1099 45.4
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 4.6e-254 882.5 1133 43.2
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.3e-244 849.4 1126 42.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 5.0e-240 835.9 1059 44.0
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 3.2e-239 833.2 1121 43.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 1.2e-233 814.7 978 45.3
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.7e-230 803.5 1145 39.9
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 5.3e-226 789.3 1532 34.7
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 8.5e-224 781.9 1543 34.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.2e-223 780.0 1535 35.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.6e-177 628.2 1390 31.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 4.8e-158 563.5 592 49.3
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 3.0e-152 544.3 574 49.7
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 3.3e-151 540.8 1019 36.2
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 8.1e-150 536.2 571 48.5
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 5.3e-149 533.5 1036 36.5
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 5.3e-149 533.5 1039 36.1
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 5.8e-148 530.0 1036 36.4
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.5e-143 515.4 979 34.4
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 3.8e-139 500.7 639 42.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-128 464.9 571 44.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.7e-128 463.4 605 42.3
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.3e-126 459.1 606 42.1
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.5e-119 435.6 570 43.3
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 6.5e-107 393.7 538 41.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-101 376.3 1015 27.9
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.5e-92 344.7 204 82.8
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-88 333.2 478 41.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.4e-80 306.2 1035 26.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 4.4e-63 248.1 487 35.9
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.9e-62 245.4 550 32.2
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.1e-61 241.5 350 40.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.0e-60 237.7 327 39.4
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.0e-60 237.7 319 42.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.9e-59 235.0 360 37.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.3e-58 230.7 536 30.6
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 8.1e-57 227.3 130 85.4
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 6.8e-56 224.2 419 36.0
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.2e-54 219.2 211 52.6
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.9e-54 218.8 321 40.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.9e-54 218.8 293 39.9
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.2e-53 215.3 294 41.5
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 5.4e-53 214.5 444 34.5
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-52 213.0 449 33.2
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.7e-51 209.5 255 44.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 8.1e-49 200.7 247 47.0
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.4e-48 199.9 468 30.1
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-48 199.9 219 49.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.9e-48 197.6 331 36.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 8.4e-46 190.7 667 28.0
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 5.1e-43 181.4 380 34.5
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 3.6e-41 175.3 790 24.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-38 165.6 222 44.1
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.1e-36 159.5 134 52.2
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.3e-35 156.0 120 56.7
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.7e-28 132.5 182 41.8
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.3e-27 129.4 116 55.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-27 129.0 271 31.4
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 6.7e-27 127.9 108 55.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.3e-26 125.6 193 39.4
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 9.6e-26 124.0 183 37.7
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.3e-25 123.6 196 34.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 6.9e-24 117.9 210 37.6
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 3.8e-22 112.1 182 37.9
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.2e-20 107.1 688 21.7
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 5.9e-15 88.2 102 48.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-14 84.3 269 27.5
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 3.3e-10 72.4 147 33.3
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 4.3e-10 72.0 69 44.9
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.1e-08 67.4 199 29.1
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 5.3e-08 65.1 53 60.4
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-07 63.9 99 37.4
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.5e-07 62.0 42 66.7
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 5.9e-07 61.6 99 36.4
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-06 60.8 71 50.7


User provided reference genes

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