Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.4e-56 222.6 109 100.0
Zm00001eb389660 Zea mays HOM05D001346 ORTHO05D001205 2.8e-20 102.1 53 96.2
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.8e-15 85.5 69 65.2
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 3.6e-15 85.1 62 72.6
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 6.1e-15 84.3 62 69.4
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.1e-15 84.3 62 69.4
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.4e-14 83.2 62 67.7
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-14 83.2 62 67.7
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-14 83.2 62 67.7
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.4e-14 83.2 62 67.7
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.4e-14 83.2 61 68.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.8e-14 82.8 62 67.7
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.8e-14 82.8 62 64.5
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 2.3e-14 82.4 62 69.4
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.3e-14 82.4 62 66.1
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.3e-14 82.4 61 70.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 66.1
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 67.7
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 69.4
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 66.1
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 69.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 69.4
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 3.0e-14 82.0 62 66.1
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 3.0e-14 82.0 61 67.2
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 4.0e-14 81.6 62 62.9
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 4.0e-14 81.6 61 68.9
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 5.2e-14 81.3 62 64.5
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 5.2e-14 81.3 62 67.7
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 5.2e-14 81.3 62 64.5
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 5.2e-14 81.3 62 66.1
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.2e-14 81.3 62 67.7
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 67.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 66.1
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 67.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 67.7
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 6.8e-14 80.9 61 68.9
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 67.7
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 6.8e-14 80.9 62 64.5
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 8.9e-14 80.5 62 66.1
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 8.9e-14 80.5 62 66.1
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 8.9e-14 80.5 62 66.1
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 8.9e-14 80.5 61 65.6
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 8.9e-14 80.5 61 65.6
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 8.9e-14 80.5 62 66.1
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 8.9e-14 80.5 61 65.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.2e-13 80.1 62 67.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.2e-13 80.1 61 67.2
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.2e-13 80.1 61 65.6
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 66.1
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 64.5
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 64.5
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 64.5
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 66.1
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.5e-13 79.7 62 64.5
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.0e-13 79.3 62 64.5
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.0e-13 79.3 62 66.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.0e-13 79.3 62 64.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 2.6e-13 79.0 61 67.2
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.6e-13 79.0 62 66.1
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.6e-13 79.0 62 62.9
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.6e-13 79.0 62 62.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.6e-13 79.0 61 65.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 2.6e-13 79.0 62 62.9
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 3.4e-13 78.6 62 62.9
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 3.4e-13 78.6 62 64.5
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 4.4e-13 78.2 61 63.9
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.4e-13 78.2 62 61.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 4.4e-13 78.2 62 64.5
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 4.4e-13 78.2 62 64.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 5.8e-13 77.8 61 63.9
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 5.8e-13 77.8 62 62.9
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 62.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 7.5e-13 77.4 62 64.5
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.5e-13 77.4 61 62.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 9.8e-13 77.0 60 65.0
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 9.8e-13 77.0 61 63.9
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.3e-12 76.6 62 62.9
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.7e-12 76.3 62 61.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.7e-12 76.3 62 61.3
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.7e-12 76.3 62 61.3
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.7e-12 76.3 62 61.3
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.7e-12 76.3 58 63.8
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.2e-12 75.9 62 61.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.2e-12 75.9 62 61.3
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.9e-12 75.5 61 63.9
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 3.7e-12 75.1 62 59.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.7e-12 75.1 62 59.7
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.7e-12 75.1 62 59.7
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 4.9e-12 74.7 62 59.7
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.3e-12 73.9 62 62.9
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 8.3e-12 73.9 61 60.7
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 1.4e-11 73.2 75 57.3
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.9e-11 72.8 58 60.3
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.2e-11 72.0 62 61.3
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.6e-10 69.7 62 56.5
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.6e-10 69.7 62 58.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 1.2e-07 60.1 99 39.4


User provided reference genes

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