Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 6.7e-50 200.3 95 100.0
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 7.4e-49 196.8 95 98.9
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.4e-47 191.8 95 95.8
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 4.2e-44 181.0 95 88.4
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 3.3e-33 144.8 94 71.3
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 1.6e-30 136.0 95 64.2
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 2.0e-30 135.6 95 65.3
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 4.5e-30 134.4 95 62.1
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.3e-29 132.9 95 62.1
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 1.7e-29 132.5 95 63.2
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 1.7e-29 132.5 95 63.2
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 2.9e-29 131.7 95 62.1
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 2.9e-29 131.7 95 62.1
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 2.9e-29 131.7 95 63.2
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 3.8e-29 131.3 95 63.2
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 5.0e-29 131.0 95 61.1
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 5.0e-29 131.0 95 62.1
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 5.0e-29 131.0 95 63.2
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 5.0e-29 131.0 95 62.1
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 6.5e-29 130.6 95 63.2
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 6.5e-29 130.6 95 60.0
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 6.5e-29 130.6 95 62.1
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.5e-29 130.2 95 58.9
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 8.5e-29 130.2 95 62.1
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 1.1e-28 129.8 94 63.8
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 1.1e-28 129.8 95 61.1
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.5e-28 129.4 94 61.7
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.5e-28 129.4 94 61.7
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 1.5e-28 129.4 94 61.7
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.5e-28 129.4 95 62.1
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.5e-28 129.4 95 62.1
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.5e-28 129.4 94 62.8
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 1.9e-28 129.0 94 62.8
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 1.9e-28 129.0 94 62.8
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 1.9e-28 129.0 95 60.0
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 2.5e-28 128.6 95 60.0
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 3.2e-28 128.3 95 62.1
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 3.2e-28 128.3 95 61.1
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 3.2e-28 128.3 95 61.1
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 3.2e-28 128.3 95 60.0
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 4.2e-28 127.9 95 61.1
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 4.2e-28 127.9 95 60.0
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 4.2e-28 127.9 95 60.0
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.2e-28 127.9 95 57.9
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 7.2e-28 127.1 95 61.1
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 7.2e-28 127.1 95 60.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 7.2e-28 127.1 95 62.1
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 7.2e-28 127.1 95 60.0
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 9.4e-28 126.7 95 60.0
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 9.4e-28 126.7 95 60.0
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 9.4e-28 126.7 94 62.8
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 9.4e-28 126.7 95 57.9
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 1.2e-27 126.3 95 61.1
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.2e-27 126.3 96 64.6
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.6e-27 125.9 94 59.6
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.6e-27 125.9 94 61.7
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 2.7e-27 125.2 95 60.0
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 2.7e-27 125.2 96 64.6
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 3.6e-27 124.8 95 61.1
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 4.7e-27 124.4 95 62.1
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 4.7e-27 124.4 94 60.6
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 4.7e-27 124.4 94 59.6
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 6.1e-27 124.0 95 58.9
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 6.1e-27 124.0 95 60.0
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 8.0e-27 123.6 95 58.9
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.0e-26 123.2 95 56.8
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.0e-26 123.2 95 57.9
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 1.4e-26 122.9 95 60.0
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.4e-26 122.9 95 60.0
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 1.4e-26 122.9 95 60.0
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.8e-26 122.5 95 62.1
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 1.8e-26 122.5 95 62.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.8e-26 122.5 94 60.6
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.3e-26 122.1 95 60.0
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 3.0e-26 121.7 95 58.9
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 4.0e-26 121.3 95 61.1
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 4.0e-26 121.3 95 61.1
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 4.0e-26 121.3 95 60.0
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 5.2e-26 120.9 95 61.1
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 5.2e-26 120.9 95 56.8
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 5.2e-26 120.9 95 58.9
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 5.2e-26 120.9 95 57.9
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 5.2e-26 120.9 95 57.9
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 6.7e-26 120.6 95 57.9
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 6.7e-26 120.6 95 60.0
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 6.7e-26 120.6 95 58.9
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 8.8e-26 120.2 95 56.8
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 8.8e-26 120.2 95 55.8
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 8.8e-26 120.2 95 56.8
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 8.8e-26 120.2 95 56.8
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.2e-25 119.8 95 56.8
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.2e-25 119.8 95 61.1
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.5e-25 119.4 95 58.9
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 1.5e-25 119.4 94 55.3
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.0e-25 119.0 95 58.9
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 2.0e-25 119.0 95 56.8
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 3.3e-25 118.2 95 60.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 4.4e-25 117.9 95 58.9
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 5.7e-25 117.5 94 53.2
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 7.5e-25 117.1 95 57.9
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 7.5e-25 117.1 95 57.9
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 7.5e-25 117.1 95 57.9
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 9.7e-25 116.7 95 56.8
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 1.7e-24 115.9 95 55.8
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.2e-24 115.5 95 52.6
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.8e-24 115.2 95 54.7
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.8e-24 115.2 95 57.9
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.7e-24 114.8 94 55.3
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.7e-24 114.8 95 52.6
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.7e-24 114.8 95 52.6
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 3.7e-24 114.8 95 52.6
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 6.3e-24 114.0 94 55.3
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.1e-23 113.2 94 52.1
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 2.4e-23 112.1 95 54.7
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 4.1e-23 111.3 95 53.7
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 5.3e-23 110.9 94 54.3
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 5.3e-23 110.9 94 55.3
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 5.3e-23 110.9 94 55.3
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 9.1e-23 110.2 94 52.1
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 1.2e-22 109.8 94 53.2
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 1.2e-22 109.8 94 53.2
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 1.6e-22 109.4 95 55.8
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 2.7e-22 108.6 94 52.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 2.7e-22 108.6 94 52.1
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 5.9e-22 107.5 94 51.1
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.0e-21 106.7 92 53.3
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 2.2e-21 105.5 94 51.1
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.2e-21 105.5 95 53.7
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 2.9e-21 105.1 94 55.3
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 5.0e-21 104.4 94 53.2
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.0e-21 104.4 94 51.1
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 5.0e-21 104.4 95 52.6
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 6.5e-21 104.0 95 51.6
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 8.5e-21 103.6 94 53.2
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 3.2e-20 101.7 95 51.6
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 3.2e-20 101.7 95 50.5
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 5.5e-20 100.9 95 51.6
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 2.7e-19 98.6 96 51.0
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.0e-18 96.7 95 47.4
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 1.4e-18 96.3 95 48.4
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 3.0e-18 95.1 95 45.3
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.2e-17 93.2 94 46.8
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 4.4e-17 91.3 95 45.3
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 4.5e-14 81.3 79 43.0
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 1.0e-13 80.1 94 35.1
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 2.6e-09 65.5 42 61.9
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 2.8e-08 62.0 82 41.5
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 4.9e-08 61.2 79 38.0
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 8.3e-08 60.5 78 42.3


User provided reference genes

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