Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb203060 Zea mays HOM05D001092 ORTHO05D000923 1.1e-71 273.1 131 100.0
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.1e-37 160.2 114 64.0
TAR362G0616 Trochodendron aralioides HOM05D001092 ORTHO05D000923 1.4e-37 159.8 126 65.1
Nn2g14501 Nelumbo nucifera HOM05D001092 ORTHO05D000923 2.4e-37 159.1 114 62.3
Aqoxy2G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 3.1e-37 158.7 113 65.5
Dinv29544 Davidia involucrata HOM05D001092 ORTHO05D000923 9.0e-37 157.1 114 67.5
Aqoxy4G01582 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.2e-36 156.8 126 60.3
HPP92_008101 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.2e-36 156.8 126 60.3
PSO210G3521 Papaver somniferum HOM05D001092 ORTHO05D000923 1.5e-36 156.4 114 63.2
PSO761G0196 Papaver somniferum HOM05D001092 ORTHO05D000923 1.5e-36 156.4 114 63.2
PGR004G1484 Punica granatum HOM05D001092 ORTHO05D000923 5.8e-36 154.5 114 62.3
Actinidia18491 Actinidia chinensis HOM05D001092 ORTHO05D000923 1.7e-35 152.9 126 60.3
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.7e-35 152.9 125 60.8
Rhsim04G0245300 Rhododendron simsii HOM05D001092 ORTHO05D000923 4.9e-35 151.4 114 64.0
QL06p013529 Quercus lobata HOM05D001092 ORTHO05D000923 1.9e-34 149.4 114 61.4
DCAR_023379 Daucus carota HOM05D001092 ORTHO05D000923 4.2e-34 148.3 113 62.8
HanXRQChr10g0319871 Helianthus annuus HOM05D001092 ORTHO05D000923 5.4e-34 147.9 126 59.5
Ah.03g145680 Amaranthus hybridus HOM05D001092 ORTHO05D000923 9.3e-34 147.1 114 61.4
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 9.3e-34 147.1 114 59.6
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 1.6e-33 146.4 114 60.5
HanXRQChr01g0031031 Helianthus annuus HOM05D001092 ORTHO05D000923 1.6e-33 146.4 126 59.5
RcHm_v2.0_Chr4g0426501 Rosa chinensis HOM05D001092 ORTHO05D000923 1.6e-33 146.4 126 56.3
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 1.6e-33 146.4 126 58.7
Lalb_Chr12g0200731 Lupinus albus HOM05D001092 ORTHO05D000923 2.1e-33 146.0 112 62.5
TWI73G1237 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 2.7e-33 145.6 113 64.6
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 6.0e-33 144.4 114 61.4
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 7.9e-33 144.1 126 55.6
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.3e-32 143.3 114 62.3
Gohir.A10G175901 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-32 143.3 126 57.1
MSTRG.3839 Avicennia marina HOM05D001092 ORTHO05D000923 1.7e-32 142.9 124 56.5
FAN17G2279 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.7e-32 142.9 126 56.3
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 2.3e-32 142.5 126 57.1
Peaxi162Scf00290g00313 Petunia axillaris HOM05D001092 ORTHO05D000923 2.3e-32 142.5 126 54.0
Psat0s45g0120 Pisum sativum HOM05D001092 ORTHO05D000923 2.3e-32 142.5 114 57.0
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 3.0e-32 142.1 126 54.0
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 3.0e-32 142.1 126 56.3
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 3.9e-32 141.7 126 57.1
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 3.9e-32 141.7 126 57.1
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 5.1e-32 141.4 114 61.4
Atru.chr4.3074 Acer truncatum HOM05D001092 ORTHO05D000923 8.7e-32 140.6 110 60.9
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 8.7e-32 140.6 125 55.2
EL10Ac6g15714 Beta vulgaris HOM05D001092 ORTHO05D000923 1.1e-31 140.2 114 60.5
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 1.1e-31 140.2 136 53.7
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 1.1e-31 140.2 127 55.9
CAN.G824.5 Capsicum annuum HOM05D001092 ORTHO05D000923 1.9e-31 139.4 115 54.8
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 1.9e-31 139.4 113 58.4
Gohir.A02G056800 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.9e-31 139.4 126 54.8
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 4.3e-31 138.3 112 57.1
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 5.6e-31 137.9 114 58.8
Lsat_1_v5_gn_1_40321 Lactuca sativa HOM05D001092 ORTHO05D000923 9.6e-31 137.1 112 58.0
Sopen09g004100 Solanum pennellii HOM05D001092 ORTHO05D000923 9.6e-31 137.1 125 54.4
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 1.6e-30 136.3 114 59.6
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.6e-30 136.3 126 54.0
Gorai.005G069700 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.6e-30 136.3 126 54.0
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 2.1e-30 136.0 114 56.1
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 2.1e-30 136.0 127 55.9
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 2.8e-30 135.6 126 52.4
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 2.8e-30 135.6 128 57.8
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 2.8e-30 135.6 114 53.5
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 3.6e-30 135.2 128 52.3
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.6e-30 135.2 126 55.6
MD16G1145300 Malus domestica HOM05D001092 ORTHO05D000923 8.1e-30 134.0 128 53.9
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 8.1e-30 134.0 114 58.8
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 8.1e-30 134.0 114 56.1
SEGI_19754 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 1.1e-29 133.7 119 53.8
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 1.4e-29 133.3 113 60.2
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.4e-29 133.3 113 60.2
SalBow8G3461 Salvia bowleyana HOM05D001092 ORTHO05D000923 1.4e-29 133.3 105 58.1
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 1.8e-29 132.9 123 56.1
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 1.8e-29 132.9 113 59.3
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 1.8e-29 132.9 113 59.3
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 1.8e-29 132.9 113 59.3
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 1.8e-29 132.9 114 53.5
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 2.4e-29 132.5 128 55.5
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 3.1e-29 132.1 113 59.3
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 3.1e-29 132.1 113 59.3
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 3.1e-29 132.1 128 54.7
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 4.0e-29 131.7 113 59.3
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 4.0e-29 131.7 113 58.4
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 5.3e-29 131.3 113 59.3
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 5.3e-29 131.3 113 59.3
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 5.3e-29 131.3 113 59.3
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 5.3e-29 131.3 114 56.1
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 7.6e-28 127.5 113 57.5
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 7.6e-28 127.5 113 57.5
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.1e-26 123.6 126 51.6
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-26 122.1 113 55.8
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 3.2e-26 122.1 113 55.8
BcaB07g33792 Brassica carinata HOM05D001092 ORTHO05D000923 1.9e-23 112.8 134 47.8
Mapoly0076s0036 Marchantia polymorpha HOM05D001092 ORTHO05D000923 1.9e-23 112.8 109 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1817 Anthoceros agrestis HOM05D001092 ORTHO05D000923 1.5e-20 103.2 102 47.1
Pp3c9_20320 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.7e-19 99.8 121 43.0
Lj6C698G8 Lonicera japonica HOM05D001092 ORTHO05D000923 8.4e-19 97.4 71 60.6
ATR1019G001 Amborella trichopoda HOM05D001092 ORTHO05D000923 1.4e-18 96.7 76 60.5
COL.COLO4_34530 Corchorus olitorius HOM05D001092 ORTHO05D000923 1.9e-18 96.3 87 55.2
Lalb_Chr13g0298811 Lupinus albus HOM05D001092 ORTHO05D000923 4.2e-18 95.1 75 58.7
Nitab4.5_0001977g0110 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.0e-16 90.5 74 54.1
Nitab4.5_0007366g0020 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.8e-16 89.7 71 54.9
Cpa.g.sc146.55 Carica papaya HOM05D001092 ORTHO05D000923 2.3e-16 89.4 73 57.5
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 3.9e-16 88.6 106 38.7
Haze_00818 Corylus avellana HOM05D001092 ORTHO05D000923 3.3e-15 85.5 75 54.7
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 3.3e-15 85.5 122 36.9
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 5.7e-15 84.7 111 36.0
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 5.7e-15 84.7 122 33.6
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.4e-15 84.3 122 35.2
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 9.6e-15 84.0 122 31.1
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 9.6e-15 84.0 122 33.6
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 1.3e-14 83.6 127 32.3
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 2.1e-14 82.8 109 34.9
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.8e-14 82.4 122 33.6
Rhsim11G0008300 Rhododendron simsii HOM05D001092 ORTHO05D000923 4.8e-14 81.6 119 34.5
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 6.3e-14 81.3 111 35.1
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.1e-13 80.5 122 32.8
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 1.8e-13 79.7 122 32.8
RcHm_v2.0_Chr4g0407721 Rosa chinensis HOM05D001092 ORTHO05D000923 1.8e-13 79.7 72 56.9
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 2.4e-13 79.3 123 33.3
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.1e-13 78.6 111 33.3
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.1e-13 78.6 111 33.3
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 1.5e-12 76.6 124 34.7
SMO240G0011 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 1.5e-12 76.6 113 35.4
SMO340G0042 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 1.5e-12 76.6 113 35.4
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.0e-12 76.3 117 34.2
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 2.0e-12 76.3 117 33.3
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.6e-12 75.9 122 32.8
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 3.4e-12 75.5 124 30.6
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 3.4e-12 75.5 122 34.4
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.3e-11 73.6 117 33.3
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.3e-11 73.6 117 33.3
SHI07563 Sapria himalayana HOM05D001092 ORTHO05D000923 1.7e-11 73.2 104 33.7
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 2.2e-11 72.8 117 34.2
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.8e-11 72.0 122 30.3
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 5.0e-11 71.6 117 30.8
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 6.5e-11 71.2 124 32.3
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 6.5e-11 71.2 122 32.0
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 8.4e-11 70.9 124 33.9
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 8.4e-11 70.9 123 28.5
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 1.1e-10 70.5 122 29.5
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.1e-10 70.5 122 31.1
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 1.1e-10 70.5 122 31.1
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 1.9e-10 69.7 115 30.4
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 2.5e-10 69.3 120 29.2
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 2.5e-10 69.3 104 31.7
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 3.2e-10 68.9 124 26.6
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 4.2e-10 68.6 131 29.8
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 5.5e-10 68.2 123 30.1
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 5.5e-10 68.2 117 29.9
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 7.2e-10 67.8 103 32.0
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 1.2e-09 67.0 124 29.0
SHI00078 Sapria himalayana HOM05D001092 ORTHO05D000923 1.2e-09 67.0 63 55.6
CBR_g4878 Chara braunii HOM05D001092 ORTHO05D000923 2.1e-09 66.2 113 34.5
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 2.7e-09 65.9 122 30.3
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 3.5e-09 65.5 122 29.5
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 3.5e-09 65.5 121 27.3
unitig_578.g15846 Utricularia gibba HOM05D001092 ORTHO05D000923 2.3e-08 62.8 51 56.9
Nitab4.5_0006135g0040 Nicotiana tabacum HOM05D001092 ORTHO05D000923 3.0e-08 62.4 117 31.6
unitig_82.g26961 Utricularia gibba HOM05D001092 ORTHO05D000923 6.7e-08 61.2 37 70.3
Actinidia03403 Actinidia chinensis HOM05D001092 ORTHO05D000923 8.7e-08 60.8 111 27.9
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 8.7e-08 60.8 117 29.1
vmacro07984 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 1.1e-07 60.5 44 68.2
vmacro07985 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 1.9e-07 59.7 37 62.2
unitig_0.g1660 Utricularia gibba HOM05D001092 ORTHO05D000923 3.3e-07 58.9 37 67.6
Cpa.g.sc98.54 Carica papaya HOM05D001092 ORTHO05D000923 9.7e-07 57.4 103 29.1
Nitab4.5_0007366g0030 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.3e-06 57.0 54 53.7


User provided reference genes

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