Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 5.3e-72 274.2 137 100.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.6e-68 262.7 136 95.6
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.4e-61 239.6 137 86.9
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.4e-61 239.6 137 87.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.2e-61 238.4 137 86.1
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 5.5e-61 237.7 133 89.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 5.5e-61 237.7 137 86.1
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 5.5e-61 237.7 137 86.9
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 7.1e-61 237.3 137 86.9
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 7.1e-61 237.3 137 86.1
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 9.3e-61 236.9 137 86.1
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 9.3e-61 236.9 137 86.1
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.2e-60 236.5 126 91.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.2e-60 236.5 137 86.9
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.6e-60 236.1 137 86.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.5e-60 235.0 126 90.5
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.5e-60 235.0 137 85.4
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.0e-60 234.2 137 86.1
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 7.9e-60 233.8 137 84.7
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 7.9e-60 233.8 126 91.3
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.0e-59 233.4 137 84.7
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.3e-59 233.0 137 83.9
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.3e-59 233.0 137 83.9
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.8e-59 232.6 136 85.3
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 1.8e-59 232.6 137 83.9
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.7e-59 230.7 137 84.7
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.7e-59 230.7 137 84.7
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 6.7e-59 230.7 126 90.5
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 6.7e-59 230.7 133 86.5
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 8.7e-59 230.3 137 83.9
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 8.7e-59 230.3 137 83.9
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.7e-59 230.3 133 85.7
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.7e-59 230.3 133 85.7
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 126 88.9
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-58 229.2 137 81.8
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.9e-58 229.2 126 89.7
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 126 87.3
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 137 83.2
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 123 90.2
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 3.3e-58 228.4 126 87.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-58 228.4 126 87.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-58 228.4 126 87.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-58 228.4 126 87.3
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 3.3e-58 228.4 126 87.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.3e-58 228.4 137 80.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 5.6e-58 227.6 123 89.4
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 5.6e-58 227.6 126 87.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 7.4e-58 227.3 126 85.7
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 7.4e-58 227.3 126 87.3
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 7.4e-58 227.3 126 88.1
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 9.6e-58 226.9 137 83.2
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 9.6e-58 226.9 126 88.1
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-57 226.5 124 87.1
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.1e-57 225.7 126 87.3
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.8e-57 225.3 126 86.5
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.7e-57 224.9 133 84.2
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.7e-57 224.9 126 86.5
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.8e-57 224.6 137 82.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 8.2e-57 223.8 133 84.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 8.2e-57 223.8 126 85.7
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.1e-56 223.4 133 84.2
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.1e-56 223.4 137 80.3
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.4e-56 223.0 133 83.5
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.8e-56 222.6 137 81.0
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.8e-56 222.6 137 81.0
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.8e-56 222.6 137 81.0
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.8e-56 222.6 133 83.5
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.4e-56 222.2 133 83.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.4e-56 222.2 137 79.6
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 4.0e-56 221.5 137 80.3
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.9e-56 220.7 137 81.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-55 219.9 137 78.8
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-55 219.9 137 81.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.2e-55 219.9 137 79.6
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.5e-55 219.5 133 81.2
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.5e-55 219.5 132 83.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.0e-55 219.2 137 80.3
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 2.6e-55 218.8 137 80.3
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 2.6e-55 218.8 137 80.3
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 3.4e-55 218.4 137 80.3
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 4.5e-55 218.0 137 80.3
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 4.5e-55 218.0 133 79.7
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.0e-54 216.9 137 78.8
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 1.7e-54 216.1 123 85.4
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.9e-54 215.3 137 78.1
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.8e-54 214.9 126 83.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 3.8e-54 214.9 137 79.6
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 4.9e-54 214.5 137 79.6
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.1e-53 213.4 137 78.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.4e-53 213.0 137 78.8
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.9e-53 212.6 149 72.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.5e-53 212.2 126 81.7
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.5e-53 212.2 123 83.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 3.2e-53 211.8 126 81.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 3.2e-53 211.8 126 81.0
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.5e-52 208.4 137 75.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.5e-50 202.2 169 65.1
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.5e-50 202.2 137 74.5
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 7.4e-50 200.7 169 64.5
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.2e-49 199.1 126 77.8
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.2e-49 199.1 179 60.3
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 3.1e-48 195.3 132 74.2
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.1e-48 194.9 137 70.8
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 9.0e-48 193.7 126 74.6
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 5.9e-47 191.0 137 73.0
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.8e-46 188.3 138 73.9
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.9e-45 186.0 190 55.3
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 5.5e-45 184.5 104 82.7
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.6e-44 183.0 131 64.9
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.7e-44 182.2 126 65.9
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-43 180.3 126 73.0
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.4e-43 179.9 126 65.1
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.1e-42 176.8 125 68.8
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 3.3e-42 175.3 126 71.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.4e-40 169.9 123 68.3
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 9.1e-40 167.2 126 62.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.2e-38 162.5 145 64.1
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.2e-37 157.5 79 89.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-34 149.4 80 82.5
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.8e-33 144.8 80 81.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 7.0e-32 141.0 94 78.7
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-31 140.2 98 71.4
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.2e-31 140.2 130 63.1
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.6e-31 139.0 71 88.7
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.5e-31 138.7 87 80.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.0e-30 137.1 88 79.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.5e-30 134.4 106 64.2
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.1e-29 133.7 88 77.3
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.9e-29 132.9 88 76.1
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.2e-29 131.7 93 71.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 89 74.2
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.7e-28 129.0 68 83.8
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-27 126.3 81 76.5
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 3.0e-27 125.6 106 65.1
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 3.9e-27 125.2 81 75.3
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 3.9e-27 125.2 81 75.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-26 122.9 91 69.2
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.3e-25 117.9 75 78.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.6e-23 113.2 64 81.2
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.4e-19 100.1 92 59.8
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.5e-18 94.4 92 55.4
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.3e-17 91.3 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.2e-15 87.0 45 82.2
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 8.5e-14 80.9 56 73.2
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.5e-13 79.3 82 51.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 9.8e-10 67.4 41 70.7
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.3e-09 64.3 42 76.2
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.6e-06 54.7 47 61.7


User provided reference genes

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