Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb191570 Zea mays HOM05D019323 ORTHO05D025732 8.2e-82 307.0 154 100.0
Zm00001eb272320 Zea mays HOM05D019323 ORTHO05D025732 1.2e-32 143.7 79 87.3
Zm00001eb083260 Zea mays HOM05D019323 ORTHO05D025732 8.4e-26 120.9 64 90.6
Zm00001eb188440 Zea mays HOM05D019323 ORTHO05D444711 3.3e-22 109.0 73 75.3
Zm00001eb109800 Zea mays HOM05D001668 ORTHO05D001693 3.5e-16 89.0 67 73.1
Os07g0627700 Oryza sativa ssp. japonica HOM05D001668 ORTHO05D001693 1.3e-13 80.5 67 64.2
Zm00001eb427690 Zea mays HOM05D019323 ORTHO05D446461 8.1e-13 77.8 146 41.1
Duzib093G0995 Durio zibethinus HOM05D001668 ORTHO05D001693 4.9e-10 68.6 65 58.5
Pp3c23_17650 Physcomitrium patens HOM05D001668 ORTHO05D001693 1.9e-09 66.6 69 43.5
TWI32G0970 Tripterygium wilfordii HOM05D001668 ORTHO05D001693 1.9e-09 66.6 65 60.0
TWI60G0057 Tripterygium wilfordii HOM05D001668 ORTHO05D001693 1.9e-09 66.6 65 60.0
CSS0033718 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 2.4e-09 66.2 65 55.4
TWI60G0974 Tripterygium wilfordii HOM05D001668 ORTHO05D001693 2.4e-09 66.2 65 60.0
Nn1g05172 Nelumbo nucifera HOM05D001668 ORTHO05D001693 4.2e-09 65.5 64 59.4
THA.LOC104806773 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 7.1e-09 64.7 71 52.1
Thecc.08G196600 Theobroma cacao HOM05D001668 ORTHO05D001693 7.1e-09 64.7 65 56.9
Glyma.10G219700 Glycine max HOM05D001668 ORTHO05D001693 9.3e-09 64.3 65 58.5
GSVIVG01013672001 Vitis vinifera HOM05D001668 ORTHO05D001693 9.3e-09 64.3 72 51.4
Cpa.g.sc26.133 Carica papaya HOM05D001668 ORTHO05D001693 1.2e-08 63.9 65 56.9
Cfa018252 Carpinus fangiana HOM05D001668 ORTHO05D001693 1.2e-08 63.9 64 54.7
Dinv13096 Davidia involucrata HOM05D001668 ORTHO05D001693 1.6e-08 63.5 65 58.5
Glyma.20G172000 Glycine max HOM05D001668 ORTHO05D001693 1.6e-08 63.5 65 58.5
MSTRG.22121 Avicennia marina HOM05D001668 ORTHO05D001693 2.1e-08 63.2 65 50.8
Rhsim11G0089500 Rhododendron simsii HOM05D001668 ORTHO05D001693 2.1e-08 63.2 68 52.9
HPP92_027832 Vanilla planifolia HOM05D001668 ORTHO05D001693 2.1e-08 63.2 65 53.8
Haze_17846 Corylus avellana HOM05D001668 ORTHO05D001693 2.7e-08 62.8 63 54.0
Nn5g28886 Nelumbo nucifera HOM05D001668 ORTHO05D001693 2.7e-08 62.8 65 55.4
PSO541G5860 Papaver somniferum HOM05D001668 ORTHO05D001693 2.7e-08 62.8 65 53.8
PSO675G7720 Papaver somniferum HOM05D001668 ORTHO05D001693 2.7e-08 62.8 65 53.8
Ciclev10002220m.g Citrus clementina HOM05D001668 ORTHO05D001693 3.5e-08 62.4 65 55.4
Cc10_g06330 Coffea canephora HOM05D001668 ORTHO05D001693 3.5e-08 62.4 65 53.8
Hma1.2p1_0276F.1_g111030 Hydrangea macrophylla HOM05D001668 ORTHO05D001693 3.5e-08 62.4 65 56.9
Manes.02G186400 Manihot esculenta HOM05D001668 ORTHO05D001693 3.5e-08 62.4 65 53.8
Sabra05G0152100 Salix brachista HOM05D001668 ORTHO05D001693 3.5e-08 62.4 64 56.2
VMungo0720G2545 Vigna mungo HOM05D001668 ORTHO05D001693 3.5e-08 62.4 65 56.9
Eucgr.F02669 Eucalyptus grandis HOM05D001668 ORTHO05D001693 4.6e-08 62.0 65 58.5
Manes.18G096500 Manihot esculenta HOM05D001668 ORTHO05D001693 4.6e-08 62.0 65 58.5
Potri.005G200000 Populus trichocarpa HOM05D001668 ORTHO05D001693 4.6e-08 62.0 64 54.7
Rhsim11G0089100 Rhododendron simsii HOM05D001668 ORTHO05D001693 4.6e-08 62.0 72 50.0
FAN22G0211 Fragaria x ananassa HOM05D001668 ORTHO05D001693 6.0e-08 61.6 72 45.8
THA.LOC104816141 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 6.0e-08 61.6 71 49.3
COL.COLO4_05238 Corchorus olitorius HOM05D001668 ORTHO05D001693 7.9e-08 61.2 65 52.3
FvH4_4g31451 Fragaria vesca HOM05D001668 ORTHO05D001693 7.9e-08 61.2 72 45.8
Nitab4.5_0000433g0060 Nicotiana tabacum HOM05D001668 ORTHO05D001693 7.9e-08 61.2 65 52.3
Actinidia29563 Actinidia chinensis HOM05D001668 ORTHO05D001693 1.0e-07 60.8 65 53.8
Lj4A706G78 Lonicera japonica HOM05D001668 ORTHO05D001693 1.0e-07 60.8 65 53.8
PGR042G3354 Punica granatum HOM05D001668 ORTHO05D001693 1.0e-07 60.8 65 55.4
Nitab4.5_0001000g0050 Nicotiana tabacum HOM05D001668 ORTHO05D001693 1.3e-07 60.5 65 52.3
ATR0564G170 Amborella trichopoda HOM05D001668 ORTHO05D001693 1.8e-07 60.1 65 50.8
BraA02t06663Z Brassica rapa HOM05D001668 ORTHO05D001693 1.8e-07 60.1 72 48.6
Lalb_Chr21g0305641 Lupinus albus HOM05D001668 ORTHO05D001693 1.8e-07 60.1 62 54.8
Phvul.007G085500 Phaseolus vulgaris HOM05D001668 ORTHO05D001693 1.8e-07 60.1 62 53.2
Psat6g189840 Pisum sativum HOM05D001668 ORTHO05D001693 1.8e-07 60.1 62 51.6
QL02p035282 Quercus lobata HOM05D001668 ORTHO05D001693 1.8e-07 60.1 64 54.7
QL02p036718 Quercus lobata HOM05D001668 ORTHO05D001693 1.8e-07 60.1 64 54.7
RcHm_v2.0_Chr4g0439941 Rosa chinensis HOM05D001668 ORTHO05D001693 1.8e-07 60.1 72 44.4
Sabra02G0049700 Salix brachista HOM05D001668 ORTHO05D001693 1.8e-07 60.1 64 54.7
TAR628G1669 Trochodendron aralioides HOM05D001668 ORTHO05D001693 1.8e-07 60.1 65 53.8
MSTRG.24486 Avicennia marina HOM05D001668 ORTHO05D001693 2.3e-07 59.7 65 49.2
CARHR025070 Cardamine hirsuta HOM05D001668 ORTHO05D001693 2.3e-07 59.7 62 50.0
FAN17G1439 Fragaria x ananassa HOM05D001668 ORTHO05D001693 2.3e-07 59.7 72 43.1
Lsat_1_v5_gn_9_42701 Lactuca sativa HOM05D001668 ORTHO05D001693 2.3e-07 59.7 65 50.8
MD05G1037600 Malus domestica HOM05D001668 ORTHO05D001693 2.3e-07 59.7 65 53.8
Oeu046080.1 Olea europaea HOM05D001668 ORTHO05D001693 2.3e-07 59.7 65 50.8
TPR.G23160 Trifolium pratense HOM05D001668 ORTHO05D001693 2.3e-07 59.7 62 51.6
EL10Ac6g13194 Beta vulgaris HOM05D001668 ORTHO05D001693 3.0e-07 59.3 65 49.2
Cpa.g.sc128.15 Carica papaya HOM05D001668 ORTHO05D001693 3.0e-07 59.3 65 53.8
DCAR_019982 Daucus carota HOM05D001668 ORTHO05D001693 3.0e-07 59.3 65 47.7
Thhalv10008529m.g Eutrema salsugineum HOM05D001668 ORTHO05D001693 3.0e-07 59.3 72 44.4
Oeu061457.2 Olea europaea HOM05D001668 ORTHO05D001693 3.0e-07 59.3 64 51.6
Sc11g0001880 Simmondsia chinensis HOM05D001668 ORTHO05D001693 3.0e-07 59.3 63 49.2
vmacro01508 Vaccinium macrocarpon HOM05D001668 ORTHO05D001693 3.0e-07 59.3 64 53.1
HanXRQChr11g0320501 Helianthus annuus HOM05D001668 ORTHO05D001693 3.9e-07 58.9 65 50.8
Potri.002G061400 Populus trichocarpa HOM05D001668 ORTHO05D001693 3.9e-07 58.9 64 54.7
Aa31LG4G11120 Aethionema arabicum HOM05D001668 ORTHO05D001693 5.1e-07 58.5 72 43.1
A02p16030 Brassica napus HOM05D001668 ORTHO05D001693 5.1e-07 58.5 72 47.2
CiPaw.15G011000 Carya illinoinensis HOM05D001668 ORTHO05D001693 5.1e-07 58.5 65 53.8
ClCG05G024350 Citrullus lanatus HOM05D001668 ORTHO05D001693 5.1e-07 58.5 70 44.3
Migut.N02934 Erythranthe guttata HOM05D001668 ORTHO05D001693 5.1e-07 58.5 65 49.2
SGA_v2.0_scaffold553G52897 Striga asiatica HOM05D001668 ORTHO05D001693 5.1e-07 58.5 65 49.2
Actinidia33387 Actinidia chinensis HOM05D001668 ORTHO05D001693 6.7e-07 58.2 65 52.3
MD10G1041400 Malus domestica HOM05D001668 ORTHO05D001693 6.7e-07 58.2 65 50.8
Hund25249 Selenicereus undatus HOM05D001668 ORTHO05D001693 6.7e-07 58.2 66 50.0
SEGI_25366 Sequoiadendron giganteum HOM05D001668 ORTHO05D001693 6.7e-07 58.2 63 50.8
Carub.0001s1397 Capsella rubella HOM05D001668 ORTHO05D001693 8.7e-07 57.8 72 44.4
CiPaw.06G084000 Carya illinoinensis HOM05D001668 ORTHO05D001693 8.7e-07 57.8 63 52.4
Gohir.D06G114700 Gossypium hirsutum HOM05D001668 ORTHO05D001693 8.7e-07 57.8 65 50.8
Gorai.010G131100 Gossypium raimondii HOM05D001668 ORTHO05D001693 8.7e-07 57.8 65 50.8
RcHm_v2.0_Chr6g0273451 Rosa chinensis HOM05D001668 ORTHO05D001693 8.7e-07 57.8 65 53.8
Sp1g12640 Schrenkiella parvula HOM05D001668 ORTHO05D001693 8.7e-07 57.8 72 44.4
Sc11g0001890 Simmondsia chinensis HOM05D001668 ORTHO05D001693 8.7e-07 57.8 63 50.8
Aqoxy6G00463 Aquilegia oxysepala HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 47.7
BcaB05g24469 Brassica carinata HOM05D001668 ORTHO05D001693 1.1e-06 57.4 72 45.8
CANSAT25G0965 Cannabis sativa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 66 50.0
FvH4_2g12700 Fragaria vesca HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 52.3
FAN15G0042 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 52.3
FAN20G1940 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 52.3
FAN24G1836 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 52.3
FAN27G0572 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.1e-06 57.4 65 52.3
MD16G1073700 Malus domestica HOM05D001668 ORTHO05D001693 1.1e-06 57.4 70 45.7
SEGI_16087 Sequoiadendron giganteum HOM05D001668 ORTHO05D001693 1.1e-06 57.4 72 41.7
THA.LOC104822119 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 1.1e-06 57.4 62 51.6
Ah.03g135160 Amaranthus hybridus HOM05D001668 ORTHO05D001693 1.5e-06 57.0 63 46.0
BcaC08g46413 Brassica carinata HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
A07p36040 Brassica napus HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
C06p43430 Brassica napus HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
BolC6t39419H Brassica oleracea HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
BraA07t31184Z Brassica rapa HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
Thhalv10019024m.g Eutrema salsugineum HOM05D001668 ORTHO05D001693 1.5e-06 57.0 72 44.4
Lj5g0002611 Lotus japonicus HOM05D001668 ORTHO05D001693 1.5e-06 57.0 62 51.6
Lalb_Chr02g0141661 Lupinus albus HOM05D001668 ORTHO05D001693 1.5e-06 57.0 62 51.6
MD13G1072900 Malus domestica HOM05D001668 ORTHO05D001693 1.5e-06 57.0 70 44.3
Prupe.8G045600 Prunus persica HOM05D001668 ORTHO05D001693 1.5e-06 57.0 65 50.8
QL03p064359 Quercus lobata HOM05D001668 ORTHO05D001693 1.5e-06 57.0 71 43.7
Sopen04g028350 Solanum pennellii HOM05D001668 ORTHO05D001693 1.5e-06 57.0 65 49.2
PGSC0003DMG400031136 Solanum tuberosum HOM05D001668 ORTHO05D001693 1.5e-06 57.0 65 49.2
AT1G14290 Arabidopsis thaliana HOM05D001668 ORTHO05D001693 1.9e-06 56.6 72 43.1
MSTRG.13419 Avicennia marina HOM05D001668 ORTHO05D001693 1.9e-06 56.6 63 52.4
CAN.G564.10 Capsicum annuum HOM05D001668 ORTHO05D001693 1.9e-06 56.6 65 47.7
Lalb_Chr06g0161841 Lupinus albus HOM05D001668 ORTHO05D001693 1.9e-06 56.6 65 50.8
Medtr1g097310 Medicago truncatula HOM05D001668 ORTHO05D001693 1.9e-06 56.6 62 50.0
THA.LOC104805155 Tarenaya hassleriana HOM05D001668 ORTHO05D001693 1.9e-06 56.6 65 49.2
TAR376G0633 Trochodendron aralioides HOM05D001668 ORTHO05D001693 1.9e-06 56.6 65 49.2
BcaB03g14742 Brassica carinata HOM05D001668 ORTHO05D001693 2.5e-06 56.2 72 44.4
BraA07t31360Z Brassica rapa HOM05D001668 ORTHO05D001693 2.5e-06 56.2 70 42.9
CiPaw.05G136400 Carya illinoinensis HOM05D001668 ORTHO05D001693 2.5e-06 56.2 63 49.2
AUR62005768 Chenopodium quinoa HOM05D001668 ORTHO05D001693 2.5e-06 56.2 63 47.6
AUR62028789 Chenopodium quinoa HOM05D001668 ORTHO05D001693 2.5e-06 56.2 63 47.6
Ca_10642_v3 Cicer arietinum L. HOM05D001668 ORTHO05D001693 2.5e-06 56.2 62 48.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.5e-06 56.2 75 41.3
Sed0006041 Sechium edule HOM05D001668 ORTHO05D001693 2.5e-06 56.2 70 47.1
C06p45860 Brassica napus HOM05D001668 ORTHO05D001693 3.3e-06 55.8 70 41.4
BolC6t39638H Brassica oleracea HOM05D001668 ORTHO05D001693 3.3e-06 55.8 70 41.4
MELO3C012088.2 Cucumis melo HOM05D001668 ORTHO05D001693 3.3e-06 55.8 70 44.3
CsaV3_5G032610 Cucumis sativus L. HOM05D001668 ORTHO05D001693 3.3e-06 55.8 70 44.3
Dinv16638 Davidia involucrata HOM05D001668 ORTHO05D001693 3.3e-06 55.8 63 49.2
Sp5g24770 Schrenkiella parvula HOM05D001668 ORTHO05D001693 3.3e-06 55.8 72 44.4
AL1G26170 Arabidopsis lyrata HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 41.7
MSTRG.2347 Avicennia marina HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 44.4
BcaC03g15102 Brassica carinata HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 44.4
A06p10260 Brassica napus HOM05D001668 ORTHO05D001693 4.3e-06 55.5 65 47.7
C02p26610 Brassica napus HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 44.4
BolC2t08732H Brassica oleracea HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 44.4
BraA06t24209Z Brassica rapa HOM05D001668 ORTHO05D001693 4.3e-06 55.5 65 47.7
CSS0010868 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 4.3e-06 55.5 63 47.6
CSS0012620 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 4.3e-06 55.5 63 47.6
CiPaw.16G006600 Carya illinoinensis HOM05D001668 ORTHO05D001693 4.3e-06 55.5 65 52.3
Lalb_Chr17g0340611 Lupinus albus HOM05D001668 ORTHO05D001693 4.3e-06 55.5 65 46.2
Nitab4.5_0000141g0140 Nicotiana tabacum HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 45.8
Prupe.1G273200 Prunus persica HOM05D001668 ORTHO05D001693 4.3e-06 55.5 63 47.6
Rhsim11G0089300 Rhododendron simsii HOM05D001668 ORTHO05D001693 4.3e-06 55.5 65 49.2
Solyc05g007460.3 Solanum lycopersicum HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 45.8
Sopen05g003340 Solanum pennellii HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 45.8
Thecc.02G347300 Theobroma cacao HOM05D001668 ORTHO05D001693 4.3e-06 55.5 72 44.4
AL2G28810 Arabidopsis lyrata HOM05D001668 ORTHO05D001693 5.6e-06 55.1 72 41.7
BcaC05g25322 Brassica carinata HOM05D001668 ORTHO05D001693 5.6e-06 55.1 65 47.7
C05p12040 Brassica napus HOM05D001668 ORTHO05D001693 5.6e-06 55.1 65 47.7
CARHR062580 Cardamine hirsuta HOM05D001668 ORTHO05D001693 5.6e-06 55.1 63 49.2
Eucgr.B03436 Eucalyptus grandis HOM05D001668 ORTHO05D001693 5.6e-06 55.1 63 49.2
Nitab4.5_0002635g0010 Nicotiana tabacum HOM05D001668 ORTHO05D001693 5.6e-06 55.1 72 44.4
SalBow6G3332 Salvia bowleyana HOM05D001668 ORTHO05D001693 5.6e-06 55.1 65 46.2
SHI29435 Sapria himalayana HOM05D001668 ORTHO05D001693 5.6e-06 55.1 63 47.6
Sp1g21930 Schrenkiella parvula HOM05D001668 ORTHO05D001693 5.6e-06 55.1 62 48.4
AT1G69640 Arabidopsis thaliana HOM05D001668 ORTHO05D001693 7.4e-06 54.7 72 41.7
MSTRG.696 Avicennia marina HOM05D001668 ORTHO05D001693 7.4e-06 54.7 72 43.1
BcaB03g13105 Brassica carinata HOM05D001668 ORTHO05D001693 7.4e-06 54.7 63 47.6
BcaC07g38731 Brassica carinata HOM05D001668 ORTHO05D001693 7.4e-06 54.7 63 47.6
CSS0038849 Camellia sinensis var. sinensis HOM05D001668 ORTHO05D001693 7.4e-06 54.7 63 47.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.4e-06 54.7 75 38.7
Sc11g0001870 Simmondsia chinensis HOM05D001668 ORTHO05D001693 7.4e-06 54.7 63 49.2
Actinidia27096 Actinidia chinensis HOM05D001668 ORTHO05D001693 9.6e-06 54.3 63 46.0
Actinidia31894 Actinidia chinensis HOM05D001668 ORTHO05D001693 9.6e-06 54.3 63 47.6
C08p16580 Brassica napus HOM05D001668 ORTHO05D001693 9.6e-06 54.3 65 44.6
BolC8t49286H Brassica oleracea HOM05D001668 ORTHO05D001693 9.6e-06 54.3 65 44.6
Cfa008991 Carpinus fangiana HOM05D001668 ORTHO05D001693 9.6e-06 54.3 63 49.2
CDE04G3463 Ceratophyllum demersum HOM05D001668 ORTHO05D001693 9.6e-06 54.3 64 46.9
Glyma.01G046500 Glycine max HOM05D001668 ORTHO05D001693 9.6e-06 54.3 70 44.3
PSO832G2414 Papaver somniferum HOM05D001668 ORTHO05D001693 9.6e-06 54.3 60 46.7
SalBow8G1549 Salvia bowleyana HOM05D001668 ORTHO05D001693 9.6e-06 54.3 65 46.2
TAR371G0415 Trochodendron aralioides HOM05D001668 ORTHO05D001693 9.6e-06 54.3 63 47.6


User provided reference genes

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