Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 0.0e+00 1458.0 797 100.0
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 0.0e+00 1126.7 800 75.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 0.0e+00 1107.0 800 77.4
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 7.4e-227 791.2 819 55.2
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.4e-219 765.8 806 52.7
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.3e-210 737.3 822 51.3
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 2.4e-209 733.0 822 54.3
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.0e-208 729.9 824 52.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.7e-208 729.6 814 52.6
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 6.6e-207 724.9 814 50.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.9e-206 723.4 824 52.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.1e-205 719.9 820 52.0
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 6.1e-205 718.4 822 52.3
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.3e-204 716.5 819 53.6
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 5.2e-204 715.3 818 51.6
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 8.9e-204 714.5 823 52.5
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-203 713.0 817 51.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.4e-203 712.6 814 50.4
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 9.8e-203 711.1 812 50.5
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.4e-201 707.2 820 51.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.1e-201 705.7 809 49.9
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 7.0e-201 704.9 819 51.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-199 701.0 817 50.7
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-199 700.7 817 50.8
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.7e-199 700.3 669 58.0
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.5e-198 696.4 814 49.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.2e-197 694.1 819 50.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.1e-197 693.3 834 49.6
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 3.6e-197 692.6 856 48.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.8e-196 690.3 814 51.8
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.0e-195 686.8 822 51.7
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 5.8e-195 685.3 825 49.7
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.8e-195 685.3 819 49.8
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.3e-194 684.1 806 49.5
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.7e-194 682.6 807 49.7
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 4.9e-194 682.2 828 51.2
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 6.4e-194 681.8 819 50.2
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 8.3e-194 681.4 834 49.6
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 3.2e-193 679.5 822 50.9
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 3.2e-193 679.5 832 49.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-191 674.5 816 48.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.3e-191 674.1 822 50.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.9e-190 670.2 809 48.9
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 9.5e-190 667.9 814 48.2
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.8e-189 666.4 847 49.1
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.6e-189 666.0 787 51.3
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.5e-187 660.6 831 49.5
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.7e-186 656.0 818 51.7
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.5e-184 649.4 863 46.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 7.8e-184 648.3 817 48.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.7e-183 647.1 820 47.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 5.1e-183 645.6 769 51.4
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.5e-182 644.0 820 48.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.3e-182 642.9 792 49.5
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 5.6e-182 642.1 671 55.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.5e-179 634.0 832 49.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 4.4e-179 632.5 808 48.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.9e-177 627.1 661 56.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.2e-176 624.4 832 46.9
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 3.5e-176 622.9 829 47.2
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.5e-176 622.9 832 46.8
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.0e-175 619.8 673 54.2
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 5.1e-175 619.0 789 49.0
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.9e-174 617.1 817 49.3
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.3e-174 616.3 840 46.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 7.3e-174 615.1 849 46.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 9.6e-174 614.8 675 53.3
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 9.6e-174 614.8 709 52.3
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.8e-173 613.2 811 47.6
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.2e-171 607.8 879 44.1
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.5e-171 607.4 826 45.6
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.8e-171 605.5 674 53.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 7.6e-171 605.1 673 53.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.2e-170 603.6 777 50.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 6.4e-170 602.1 846 45.4
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.4e-170 601.7 834 46.0
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 8.7e-167 591.7 650 50.9
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.3e-165 587.8 676 53.0
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.6e-165 587.4 468 65.2
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.1e-165 587.0 843 44.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.8e-165 585.9 681 52.6
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 8.1e-165 585.1 679 52.6
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.4e-164 584.3 688 52.0
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 6.9e-164 582.0 810 45.1
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 6.9e-164 582.0 678 51.8
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.2e-163 581.3 500 61.0
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.5e-163 580.9 675 52.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.5e-163 580.9 763 46.4
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.9e-162 576.6 913 44.6
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 8.4e-162 575.1 913 44.4
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.2e-161 572.8 606 53.1
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.6e-160 569.3 832 44.6
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 6.0e-160 568.9 982 40.4
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.9e-158 563.9 559 56.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.5e-158 563.5 672 51.9
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.6e-157 560.8 816 45.2
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 4.5e-155 552.7 807 45.8
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 5.8e-155 552.4 816 44.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 2.9e-154 550.1 413 65.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 7.1e-153 545.4 821 43.4
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.6e-149 534.3 804 43.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.4e-148 531.2 359 71.9
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.2e-147 528.1 823 43.5
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.2e-146 523.9 637 47.7
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.7e-144 516.9 361 69.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 3.5e-144 516.5 478 57.7
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.0e-143 513.5 345 73.9
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.9e-142 510.8 878 40.9
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 9.6e-142 508.4 786 44.0
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 2.4e-140 503.8 361 68.7
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.6e-136 491.1 408 60.8
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.4e-132 477.2 364 64.8
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.1e-132 476.9 806 42.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.9e-129 467.6 356 64.0
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.0e-127 461.8 447 55.3
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.0e-127 461.8 346 64.5
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.8e-127 461.1 386 60.1
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.8e-125 453.0 834 39.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.4e-124 451.4 416 58.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 6.9e-124 449.1 389 59.4
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.7e-120 437.2 498 50.4
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.8e-119 434.5 382 57.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 6.7e-119 432.6 661 46.0
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.7e-117 427.9 438 52.3
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.8e-116 424.5 630 44.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.2e-114 417.5 377 57.6
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 8.5e-114 415.6 328 65.5
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.2e-112 411.8 302 68.9
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.6e-112 411.4 446 50.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.1e-112 409.5 487 50.5
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 9.7e-110 402.1 432 50.2
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 8.2e-109 399.1 506 45.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.1e-108 398.7 762 38.6
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.2e-107 395.2 280 70.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.2e-105 386.0 571 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.7e-98 364.8 392 49.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.8e-93 347.4 606 41.1
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.5e-89 332.4 241 70.5
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.9e-77 294.3 450 41.3
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.9e-77 293.5 604 36.3
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.3e-74 285.4 320 47.2
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.1e-68 263.8 191 68.6
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 2.7e-67 261.2 200 64.5
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.1e-65 255.8 264 53.4
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.4e-61 240.0 185 64.3
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.9e-60 238.4 437 35.2
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 4.6e-59 233.8 314 40.4
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.0e-50 204.5 154 66.2
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 5.1e-50 203.8 185 57.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.6e-48 198.7 187 57.8
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 2.8e-48 198.0 453 37.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.0e-47 194.1 492 34.3
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.3e-45 189.1 379 38.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.9e-44 185.3 464 35.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.9e-44 185.3 394 32.7
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.5e-43 181.0 468 37.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 5.1e-42 177.2 101 84.2
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 2.6e-38 164.9 439 30.3
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 4.9e-37 160.6 151 54.3
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.5e-35 154.5 487 38.6
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.9e-34 151.0 472 30.5
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 2.5e-33 148.3 569 31.6
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 2.1e-32 145.2 85 75.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.4e-28 132.5 299 35.5
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 1.4e-28 132.5 469 30.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.8e-26 125.6 413 29.5
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.6e-22 110.2 481 28.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-21 109.0 65 81.5
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.2e-20 104.8 66 75.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.6e-19 100.9 128 50.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 3.9e-18 97.8 96 55.2
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.7e-18 96.7 53 81.1
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.3e-16 92.8 137 44.5
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.0e-14 85.5 60 65.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 4.4e-09 67.8 52 61.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.7e-09 66.6 47 68.1
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.2e-08 65.5 59 57.6
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.7e-08 64.7 46 60.9
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.4e-07 62.8 34 85.3
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.5e-06 57.8 41 73.2


User provided reference genes

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