Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb162610 Zea mays HOM05D000621 ORTHO05D000421 1.5e-74 282.7 137 100.0
Os01g0556800 Oryza sativa ssp. japonica HOM05D000621 ORTHO05D000421 5.7e-18 94.7 106 46.2
Zm00001eb113970 Zea mays HOM05D000621 ORTHO05D000421 8.5e-14 80.9 90 41.1
ECA233G3045 Erigeron canadensis HOM05D000621 ORTHO05D000421 3.6e-12 75.5 91 40.7
GSVIVG01031264001 Vitis vinifera HOM05D000621 ORTHO05D000421 2.3e-11 72.8 91 39.6
HanXRQChr05g0135641 Helianthus annuus HOM05D000621 ORTHO05D000421 4.0e-11 72.0 87 41.4
Lsat_1_v5_gn_6_15721 Lactuca sativa HOM05D000621 ORTHO05D000421 5.2e-11 71.6 91 38.5
PGR083G2575 Punica granatum HOM05D000621 ORTHO05D000421 7.5e-10 67.8 89 39.3
Zm00001eb201810 Zea mays HOM05D000621 ORTHO05D000421 7.5e-10 67.8 90 35.6
Cc02_g35280 Coffea canephora HOM05D000621 ORTHO05D000421 1.3e-09 67.0 95 35.8
C08p49530 Brassica napus HOM05D000621 ORTHO05D000421 1.7e-09 66.6 92 38.0
BolC8t52490H Brassica oleracea HOM05D000621 ORTHO05D000421 1.7e-09 66.6 92 38.0
Eucgr.L00253 Eucalyptus grandis HOM05D000621 ORTHO05D000421 1.7e-09 66.6 86 44.2
Rhsim11G0097900 Rhododendron simsii HOM05D000621 ORTHO05D000421 1.7e-09 66.6 91 37.4
THA.LOC104823716 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 3.7e-09 65.5 94 36.2
Solyc01g100780.3 Solanum lycopersicum HOM05D000621 ORTHO05D000421 4.8e-09 65.1 86 38.4
Sopen01g044280 Solanum pennellii HOM05D000621 ORTHO05D000421 4.8e-09 65.1 86 38.4
TAR633G2377 Trochodendron aralioides HOM05D000621 ORTHO05D000421 4.8e-09 65.1 91 36.3
BcaC07g41898 Brassica carinata HOM05D000621 ORTHO05D000421 6.3e-09 64.7 87 39.1
Medtr1g084210 Medicago truncatula HOM05D000621 ORTHO05D000421 6.3e-09 64.7 95 29.5
PGSC0003DMG400002758 Solanum tuberosum HOM05D000621 ORTHO05D000421 6.3e-09 64.7 86 37.2
vmacro07970 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 6.3e-09 64.7 87 37.9
A09p65540 Brassica napus HOM05D000621 ORTHO05D000421 8.3e-09 64.3 92 37.0
BraA09t41899Z Brassica rapa HOM05D000621 ORTHO05D000421 8.3e-09 64.3 92 37.0
Hund09660 Selenicereus undatus HOM05D000621 ORTHO05D000421 8.3e-09 64.3 88 36.4
Haze_22242 Corylus avellana HOM05D000621 ORTHO05D000421 1.1e-08 63.9 92 33.7
Peaxi162Scf00357g00724 Petunia axillaris HOM05D000621 ORTHO05D000421 1.1e-08 63.9 86 36.0
TAR362G0161 Trochodendron aralioides HOM05D000621 ORTHO05D000421 1.1e-08 63.9 95 36.8
Lj5C325G6 Lonicera japonica HOM05D000621 ORTHO05D000421 1.8e-08 63.2 87 33.3
Thecc.04G160500 Theobroma cacao HOM05D000621 ORTHO05D000421 1.8e-08 63.2 133 30.8
TWI56G1461 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.8e-08 63.2 86 39.5
Aqoxy5G00224 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 2.4e-08 62.8 95 34.7
EL10Ac3g05555 Beta vulgaris HOM05D000621 ORTHO05D000421 2.4e-08 62.8 92 33.7
Thecc.04G306400 Theobroma cacao HOM05D000621 ORTHO05D000421 2.4e-08 62.8 94 33.0
Haze_22238 Corylus avellana HOM05D000621 ORTHO05D000421 3.1e-08 62.4 91 33.0
Rhsim02G0002100 Rhododendron simsii HOM05D000621 ORTHO05D000421 3.1e-08 62.4 87 36.8
Dinv30910 Davidia involucrata HOM05D000621 ORTHO05D000421 4.1e-08 62.0 91 31.9
CAN.G1033.3 Capsicum annuum HOM05D000621 ORTHO05D000421 5.4e-08 61.6 91 34.1
Cc01_g21640 Coffea canephora HOM05D000621 ORTHO05D000421 5.4e-08 61.6 99 33.3
Manes.09G186900 Manihot esculenta HOM05D000621 ORTHO05D000421 7.0e-08 61.2 87 29.9
QL06p013123 Quercus lobata HOM05D000621 ORTHO05D000421 7.0e-08 61.2 92 33.7
THA.LOC104816857 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 7.0e-08 61.2 88 31.8
Aqoxy6G00212 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 9.1e-08 60.8 90 34.4
CiPaw.07G182000 Carya illinoinensis HOM05D000621 ORTHO05D000421 9.1e-08 60.8 93 32.3
Migut.N00947 Erythranthe guttata HOM05D000621 ORTHO05D000421 9.1e-08 60.8 91 34.1
Rhsim02G0162900 Rhododendron simsii HOM05D000621 ORTHO05D000421 9.1e-08 60.8 100 34.0
Rhsim08G0085300 Rhododendron simsii HOM05D000390 ORTHO05D001192 9.1e-08 60.8 89 38.2
vmacro01582 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 9.1e-08 60.8 91 34.1
ATR0691G208 Amborella trichopoda HOM05D000621 ORTHO05D000421 1.2e-07 60.5 94 28.7
CARHR009280 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.2e-07 60.5 91 33.0
Medtr2g033390 Medicago truncatula HOM05D000621 ORTHO05D000421 1.2e-07 60.5 92 34.8
Oeu020921.1 Olea europaea HOM05D000621 ORTHO05D000421 1.2e-07 60.5 87 36.8
Oeu048871.1 Olea europaea HOM05D000621 ORTHO05D000421 1.2e-07 60.5 93 35.5
Oeu062261.1 Olea europaea HOM05D000621 ORTHO05D000421 1.2e-07 60.5 93 35.5
Psat0s4293g0120 Pisum sativum HOM05D000621 ORTHO05D000421 1.2e-07 60.5 91 31.9
VMungo0720G2260 Vigna mungo HOM05D000621 ORTHO05D000421 1.2e-07 60.5 96 28.1
Aqoxy2G02652 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.6e-07 60.1 87 37.9
Cc05_g08320 Coffea canephora HOM05D000621 ORTHO05D000421 1.6e-07 60.1 94 33.0
Lalb_Chr06g0167411 Lupinus albus HOM05D000621 ORTHO05D000421 1.6e-07 60.1 87 37.9
Lalb_Chr21g0310171 Lupinus albus HOM05D000621 ORTHO05D000421 1.6e-07 60.1 87 35.6
Psat6g153280 Pisum sativum HOM05D000621 ORTHO05D000421 1.6e-07 60.1 93 33.3
Psat6g155120 Pisum sativum HOM05D000621 ORTHO05D000421 1.6e-07 60.1 91 31.9
SGA_v2.0_scaffold5G02898 Striga asiatica HOM05D000621 ORTHO05D000421 1.6e-07 60.1 91 33.0
CANSAT54G1464 Cannabis sativa HOM05D000621 ORTHO05D000421 2.0e-07 59.7 87 33.3
COL.COLO4_34565 Corchorus olitorius HOM05D000058 ORTHO05D007484 2.0e-07 59.7 111 34.2
QL09p026609 Quercus lobata HOM05D000621 ORTHO05D000421 2.0e-07 59.7 93 30.1
Sc05g0000280 Simmondsia chinensis HOM05D000621 ORTHO05D000421 2.0e-07 59.7 92 35.9
Manes.03G208100 Manihot esculenta HOM05D000621 ORTHO05D000421 2.7e-07 59.3 87 34.5
Sopen01g023650 Solanum pennellii HOM05D000621 ORTHO05D000421 2.7e-07 59.3 91 33.0
SGA_v2.0_scaffold9G04815 Striga asiatica HOM05D000621 ORTHO05D000421 2.7e-07 59.3 87 34.5
Atru.chr2.240 Acer truncatum HOM05D000621 ORTHO05D000421 3.5e-07 58.9 92 32.6
MSTRG.27927 Avicennia marina HOM05D000621 ORTHO05D000421 3.5e-07 58.9 87 33.3
DCAR_002112 Daucus carota HOM05D000621 ORTHO05D000421 3.5e-07 58.9 92 29.3
Phvul.007G202900 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.5e-07 58.9 87 32.2
Potri.013G006900 Populus trichocarpa HOM05D000621 ORTHO05D000421 3.5e-07 58.9 94 33.0
QL09p005700 Quercus lobata HOM05D000621 ORTHO05D000421 3.5e-07 58.9 88 34.1
Sc16g0009170 Simmondsia chinensis HOM05D000621 ORTHO05D000421 3.5e-07 58.9 93 29.0
vmacro15168 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 3.5e-07 58.9 87 35.6
CANSAT78G0416 Cannabis sativa HOM05D000621 ORTHO05D000421 4.5e-07 58.5 86 33.7
Lj3A834G67 Lonicera japonica HOM05D000621 ORTHO05D000421 4.5e-07 58.5 86 33.7
Lj6g0000808 Lotus japonicus HOM05D000621 ORTHO05D000421 4.5e-07 58.5 100 31.0
MD07G1304600 Malus domestica HOM05D000621 ORTHO05D000421 4.5e-07 58.5 93 31.2
Oeu056549.1 Olea europaea HOM05D000621 ORTHO05D000421 4.5e-07 58.5 87 34.5
SalBow3G2697 Salvia bowleyana HOM05D000621 ORTHO05D000421 4.5e-07 58.5 91 37.4
SalBow7G2455 Salvia bowleyana HOM05D000621 ORTHO05D000421 4.5e-07 58.5 98 30.6
Aa31LG1G5800 Aethionema arabicum HOM05D000621 ORTHO05D000421 5.9e-07 58.2 87 36.8
Aqoxy6G00295 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 5.9e-07 58.2 87 35.6
MSTRG.18079 Avicennia marina HOM05D000621 ORTHO05D000421 5.9e-07 58.2 91 35.2
CSS0010554 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 5.9e-07 58.2 91 35.2
Potri.005G011100 Populus trichocarpa HOM05D000621 ORTHO05D000421 5.9e-07 58.2 86 33.7
Atru.chr1.3079 Acer truncatum HOM05D000621 ORTHO05D000421 7.7e-07 57.8 94 35.1
Atru.chr12.1186 Acer truncatum HOM05D000621 ORTHO05D000421 7.7e-07 57.8 95 31.6
DCAR_005741 Daucus carota HOM05D000621 ORTHO05D000421 7.7e-07 57.8 91 34.1
DCAR_026976 Daucus carota HOM05D000621 ORTHO05D000421 7.7e-07 57.8 86 31.4
Thhalv10009728m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 7.7e-07 57.8 90 36.7
Oeu013206.1 Olea europaea HOM05D000621 ORTHO05D000421 7.7e-07 57.8 93 35.5
Psat6g154280 Pisum sativum HOM05D000621 ORTHO05D000421 7.7e-07 57.8 93 30.1
SalBow3G2875 Salvia bowleyana HOM05D000621 ORTHO05D000421 7.7e-07 57.8 93 33.3
Hund09661 Selenicereus undatus HOM05D000621 ORTHO05D000421 7.7e-07 57.8 88 35.2
TPR.G2597 Trifolium pratense HOM05D000621 ORTHO05D000421 7.7e-07 57.8 93 30.1
vmacro16895 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 7.7e-07 57.8 92 33.7
Actinidia35509 Actinidia chinensis HOM05D000621 ORTHO05D000421 1.0e-06 57.4 92 33.7
AT3G06520 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.0e-06 57.4 87 35.6
BcaC03g15228 Brassica carinata HOM05D000975 ORTHO05D003128 1.0e-06 57.4 100 34.0
CAN.G1076.39 Capsicum annuum HOM05D000621 ORTHO05D000421 1.0e-06 57.4 85 32.9
CiPaw.07G031400 Carya illinoinensis HOM05D000621 ORTHO05D000421 1.0e-06 57.4 87 33.3
Migut.D00056 Erythranthe guttata HOM05D000621 ORTHO05D000421 1.0e-06 57.4 86 34.9
QL03p016316 Quercus lobata HOM05D000621 ORTHO05D000421 1.0e-06 57.4 95 31.6
QL03p016528 Quercus lobata HOM05D000621 ORTHO05D000421 1.0e-06 57.4 95 31.6
Sabra13G0005800 Salix brachista HOM05D000621 ORTHO05D000421 1.0e-06 57.4 86 33.7
Actinidia31344 Actinidia chinensis HOM05D000621 ORTHO05D000421 1.3e-06 57.0 89 33.7
Aqoxy6G00419 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.3e-06 57.0 90 31.1
BcaB07g34130 Brassica carinata HOM05D000621 ORTHO05D000421 1.3e-06 57.0 92 34.8
CAN.G456.16 Capsicum annuum HOM05D000621 ORTHO05D000421 1.3e-06 57.0 91 33.0
Cc01_g21650 Coffea canephora HOM05D000621 ORTHO05D000421 1.3e-06 57.0 101 36.6
Dinv33142 Davidia involucrata HOM05D000621 ORTHO05D000421 1.3e-06 57.0 88 37.5
Duzib151G0248 Durio zibethinus HOM05D000621 ORTHO05D000421 1.3e-06 57.0 89 34.8
Gorai.002G031600 Gossypium raimondii HOM05D000621 ORTHO05D000421 1.3e-06 57.0 92 32.6
Nn4g25511 Nelumbo nucifera HOM05D000621 ORTHO05D000421 1.3e-06 57.0 92 32.6
QL03p016640 Quercus lobata HOM05D000621 ORTHO05D000421 1.3e-06 57.0 95 31.6
QL03p016784 Quercus lobata HOM05D000621 ORTHO05D000421 1.3e-06 57.0 95 31.6
Hund07303 Selenicereus undatus HOM05D000621 ORTHO05D000421 1.3e-06 57.0 91 30.8
SEGI_10478 Sequoiadendron giganteum HOM05D000621 ORTHO05D000421 1.3e-06 57.0 96 32.3
Solyc01g058160.3 Solanum lycopersicum HOM05D000621 ORTHO05D000421 1.3e-06 57.0 91 30.8
Atru.chr5.3214 Acer truncatum HOM05D000621 ORTHO05D000421 1.7e-06 56.6 90 32.2
BcaC05g24786 Brassica carinata HOM05D000621 ORTHO05D000421 1.7e-06 56.6 97 33.0
BolC5t29489H Brassica oleracea HOM05D000621 ORTHO05D000421 1.7e-06 56.6 97 33.0
Migut.M00703 Erythranthe guttata HOM05D000621 ORTHO05D000421 1.7e-06 56.6 87 32.2
Eucgr.B01689 Eucalyptus grandis HOM05D000621 ORTHO05D000421 1.7e-06 56.6 89 33.7
Lj2P614T17 Lonicera japonica HOM05D000621 ORTHO05D000421 1.7e-06 56.6 119 32.8
MD01G1232500 Malus domestica HOM05D000621 ORTHO05D000421 1.7e-06 56.6 93 31.2
Sabra05G0008200 Salix brachista HOM05D000621 ORTHO05D000421 1.7e-06 56.6 92 32.6
Sabra05G0019500 Salix brachista HOM05D000621 ORTHO05D000421 1.7e-06 56.6 92 32.6
Sp7g03270 Schrenkiella parvula HOM05D000621 ORTHO05D000421 1.7e-06 56.6 87 35.6
PGSC0003DMG400009053 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.7e-06 56.6 87 35.6
Actinidia35214 Actinidia chinensis HOM05D000621 ORTHO05D000421 2.3e-06 56.2 91 33.0
BcaC04g21307 Brassica carinata HOM05D000975 ORTHO05D003128 2.3e-06 56.2 92 34.8
Gohir.D01G023580 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.3e-06 56.2 87 33.3
HanXRQChr04g0106261 Helianthus annuus HOM05D000621 ORTHO05D000421 2.3e-06 56.2 87 32.2
Psat0s4293g0040 Pisum sativum HOM05D000621 ORTHO05D000421 2.3e-06 56.2 92 30.4
Prupe.2G061600 Prunus persica HOM05D000621 ORTHO05D000421 2.3e-06 56.2 87 32.2
arahy.Tifrunner.gnm1.ann1.MEP28M Arachis hypogaea HOM05D000621 ORTHO05D000421 2.9e-06 55.8 89 32.6
arahy.Tifrunner.gnm1.ann1.YAHF4W Arachis hypogaea HOM05D000621 ORTHO05D000421 2.9e-06 55.8 89 32.6
COL.COLO4_08200 Corchorus olitorius HOM05D000621 ORTHO05D000421 2.9e-06 55.8 91 33.0
Haze_04043 Corylus avellana HOM05D000621 ORTHO05D000421 2.9e-06 55.8 89 31.5
Gohir.A01G035700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.9e-06 55.8 87 33.3
QL02p093988 Quercus lobata HOM05D000621 ORTHO05D000421 2.9e-06 55.8 90 33.3
Rhsim04G0025500 Rhododendron simsii HOM05D000621 ORTHO05D000421 2.9e-06 55.8 92 33.7
CSS0001187 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 3.8e-06 55.5 94 33.0
CAN.G293.6 Capsicum annuum HOM05D000621 ORTHO05D000421 3.8e-06 55.5 87 36.8
Cc03_g11460 Coffea canephora HOM05D000621 ORTHO05D000421 3.8e-06 55.5 94 27.7
DCAR_005739 Daucus carota HOM05D000087 ORTHO05D013030 3.8e-06 55.5 91 35.2
RcHm_v2.0_Chr1g0373081 Rosa chinensis HOM05D000621 ORTHO05D000421 3.8e-06 55.5 86 34.9
TWI12G0894 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 3.8e-06 55.5 93 31.2
HPP92_027925 Vanilla planifolia HOM05D000621 ORTHO05D000421 3.8e-06 55.5 92 28.3
ATR0686G219 Amborella trichopoda HOM05D000621 ORTHO05D000421 5.0e-06 55.1 92 32.6
Ca_10185_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 5.0e-06 55.1 92 30.4
Lj3g0001216 Lotus japonicus HOM05D000621 ORTHO05D000421 5.0e-06 55.1 90 32.2
Actinidia06113 Actinidia chinensis HOM05D000621 ORTHO05D000421 6.6e-06 54.7 78 37.2
Actinidia20973 Actinidia chinensis HOM05D000621 ORTHO05D000421 6.6e-06 54.7 86 37.2
Aqoxy6G00423 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 6.6e-06 54.7 95 29.5
AL1G19810 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 6.6e-06 54.7 87 34.5
arahy.Tifrunner.gnm1.ann1.CG4MLB Arachis hypogaea HOM05D000621 ORTHO05D000421 6.6e-06 54.7 92 30.4
C01p26870 Brassica napus HOM05D000975 ORTHO05D000421 6.6e-06 54.7 86 34.9
Cpa.g.sc48.181 Carica papaya HOM05D000621 ORTHO05D000421 6.6e-06 54.7 87 32.2
AUR62024602 Chenopodium quinoa HOM05D000621 ORTHO05D000421 6.6e-06 54.7 126 29.4
Lalb_Chr15g0089071 Lupinus albus HOM05D000621 ORTHO05D000421 6.6e-06 54.7 87 29.9
Nitab4.5_0004104g0100 Nicotiana tabacum HOM05D000621 ORTHO05D000421 6.6e-06 54.7 87 35.6
Sp1g05130 Schrenkiella parvula HOM05D000621 ORTHO05D000421 6.6e-06 54.7 87 29.9
Solyc01g058170.4 Solanum lycopersicum HOM05D000621 ORTHO05D000421 6.6e-06 54.7 90 32.2
SGA_v2.0_scaffold64G22092 Striga asiatica HOM05D000621 ORTHO05D000421 6.6e-06 54.7 86 34.9
Aqoxy1G02364 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 8.6e-06 54.3 90 34.4
arahy.Tifrunner.gnm1.ann1.492HD2 Arachis hypogaea HOM05D000621 ORTHO05D000421 8.6e-06 54.3 94 28.7
BcaC03g14807 Brassica carinata HOM05D000975 ORTHO05D000395 8.6e-06 54.3 94 35.1
BcaC04g22080 Brassica carinata HOM05D000975 ORTHO05D003128 8.6e-06 54.3 90 35.6
C07p25800 Brassica napus HOM05D000975 ORTHO05D003128 8.6e-06 54.3 91 36.3
C09p23710 Brassica napus HOM05D000975 ORTHO05D003128 8.6e-06 54.3 90 35.6
CiPaw.04G132400 Carya illinoinensis HOM05D000621 ORTHO05D000421 8.6e-06 54.3 90 36.7
MBI19_g03282_MAGBIO Magnolia biondii HOM05D000621 ORTHO05D000421 8.6e-06 54.3 96 27.1
Manes.09G128200 Manihot esculenta HOM05D000621 ORTHO05D000421 8.6e-06 54.3 91 31.9
Oeu053731.1 Olea europaea HOM05D000621 ORTHO05D000421 8.6e-06 54.3 87 34.5
Prupe.2G323100 Prunus persica HOM05D000621 ORTHO05D000421 8.6e-06 54.3 87 32.2


User provided reference genes

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