Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.1e-268 929.5 500 100.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.8e-202 709.5 498 78.5
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.8e-147 525.4 503 60.6
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.2e-147 524.6 494 59.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 4.0e-146 522.3 502 61.0
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.6e-145 519.6 509 59.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.9e-144 516.2 502 58.4
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.9e-143 513.5 494 61.3
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-143 513.5 466 61.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 3.2e-143 512.7 460 63.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.1e-142 510.0 466 60.9
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.7e-142 509.6 499 59.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 3.5e-142 509.2 467 61.2
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.9e-142 508.1 471 61.8
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.3e-141 507.3 472 62.3
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.3e-140 502.7 495 58.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 4.3e-140 502.3 497 59.4
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.7e-140 501.9 494 58.1
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.7e-140 501.9 462 62.1
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.4e-140 501.5 464 59.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.8e-139 499.6 493 60.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.7e-139 499.2 473 58.1
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 3.7e-139 499.2 514 58.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 8.2e-139 498.0 449 62.1
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.4e-138 497.3 470 58.5
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 3.1e-138 496.1 467 61.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.1e-138 495.7 451 59.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 6.9e-138 495.0 471 58.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.2e-137 494.2 493 58.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.0e-137 493.4 494 57.1
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.0e-137 493.4 509 58.0
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.6e-137 493.0 495 57.8
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.6e-137 493.0 492 58.1
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 7.7e-137 491.5 494 60.1
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-136 490.7 499 58.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-136 490.7 499 58.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.3e-136 490.7 499 58.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.3e-136 490.7 489 58.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.7e-136 490.3 485 58.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.9e-136 489.6 496 58.1
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.1e-135 487.6 492 58.5
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-135 487.3 499 57.3
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.4e-135 487.3 471 59.7
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-135 486.9 489 58.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.2e-135 486.1 502 58.2
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.5e-135 485.3 502 58.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.1e-134 483.4 495 58.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.7e-134 483.0 472 58.1
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.6e-134 482.6 492 59.3
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.6e-134 482.6 501 57.5
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.6e-134 482.3 502 57.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 6.1e-134 481.9 477 58.5
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 6.1e-134 481.9 460 60.2
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.0e-133 481.1 501 57.5
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.4e-133 480.7 485 59.0
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.0e-133 479.6 493 58.0
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 3.9e-133 479.2 462 59.3
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 5.1e-133 478.8 485 58.8
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 6.7e-133 478.4 458 60.5
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.8e-133 478.0 501 56.9
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 8.8e-133 478.0 509 56.4
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 8.8e-133 478.0 509 57.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 8.8e-133 478.0 502 56.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 8.8e-133 478.0 475 58.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-132 477.6 492 58.3
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.0e-132 476.9 511 56.9
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.3e-132 476.1 489 57.3
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.3e-132 476.1 492 56.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.3e-132 476.1 485 56.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.7e-132 475.3 466 58.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 5.7e-132 475.3 498 56.6
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 7.4e-132 474.9 496 57.3
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.3e-131 474.2 497 57.1
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.8e-131 473.0 511 56.9
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.8e-131 472.2 512 56.2
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 8.2e-131 471.5 503 56.9
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.4e-130 470.7 474 57.4
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 5.3e-130 468.8 505 55.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 9.1e-130 468.0 499 56.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.5e-129 467.2 514 55.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.0e-129 466.8 504 55.8
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.4e-129 466.1 495 56.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.0e-128 464.5 509 56.0
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-128 464.2 508 56.1
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.7e-128 463.8 496 56.2
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-128 463.8 499 55.7
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.2e-128 463.4 487 57.1
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.9e-128 463.0 506 54.9
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.9e-128 463.0 481 57.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.9e-128 463.0 425 59.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 3.8e-128 462.6 461 58.4
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.8e-128 462.6 508 56.3
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 5.0e-128 462.2 511 56.0
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-127 461.1 496 56.0
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.4e-127 460.7 469 57.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.2e-127 459.1 508 55.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.2e-127 459.1 499 55.5
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.2e-127 459.1 494 55.7
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 9.4e-127 458.0 500 57.2
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.2e-126 457.6 457 58.4
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.6e-126 456.1 511 54.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 7.9e-126 454.9 502 55.4
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 3.9e-125 452.6 469 56.9
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.9e-125 452.6 585 49.4
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 6.7e-125 451.8 474 56.3
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.5e-124 450.7 499 53.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.7e-123 446.0 495 53.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 7.0e-122 441.8 495 55.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.7e-120 437.2 504 54.6
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.1e-119 434.5 511 52.1
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-119 433.0 459 57.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 6.7e-117 425.2 452 57.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.7e-116 422.2 450 56.7
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 2.9e-112 409.8 391 57.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.4e-111 404.8 361 60.4
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.1e-110 403.7 498 50.8
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.1e-110 402.1 486 50.8
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.0e-109 399.8 514 51.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 4.0e-109 399.4 400 57.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.5e-108 397.5 479 53.0
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.4e-106 391.0 488 50.0
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.2e-105 387.9 463 49.2
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-101 374.0 472 51.1
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.7e-97 358.6 335 64.2
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.3e-95 353.2 511 44.8
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.3e-93 347.1 445 50.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 8.3e-91 338.6 331 57.1
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 3.5e-89 333.2 451 47.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.3e-87 325.5 303 56.4
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 2.8e-86 323.6 473 44.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.4e-77 294.7 340 52.6
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-73 280.8 301 54.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.6e-65 253.1 269 56.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-61 241.9 220 60.9
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.2e-54 216.1 191 59.2
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.4e-52 209.9 240 53.8
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 4.6e-49 199.9 184 64.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.0e-48 198.7 312 43.3
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 4.3e-47 193.4 531 33.1
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.8e-44 183.0 243 46.9
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.4e-43 179.1 167 61.1
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.5e-41 173.7 212 46.7
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 6.5e-35 152.9 477 31.0
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.9e-34 151.4 136 63.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 8.4e-27 125.9 173 43.4
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.0e-24 117.5 594 27.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 2.7e-17 94.4 93 60.2
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 8.8e-16 89.4 87 65.5
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.2e-14 82.8 96 49.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 1.8e-13 81.6 99 44.4
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.8e-13 81.6 99 45.5
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.5e-12 78.6 88 55.7
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-12 78.2 82 54.9
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 2.0e-12 78.2 180 30.0
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.9e-10 71.6 145 42.1
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.9e-09 66.2 89 46.1


User provided reference genes

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