Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 0.0e+00 1157.5 648 100.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.3e-311 1072.4 651 93.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.8e-224 782.3 609 74.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 4.9e-168 595.5 670 54.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.4e-161 572.4 673 53.0
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.3e-157 560.1 675 53.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 6.6e-157 558.5 671 52.5
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 8.6e-157 558.1 665 52.3
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 4.3e-156 555.8 669 51.9
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.6e-155 553.9 657 55.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.6e-155 553.9 677 52.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.8e-155 553.1 670 51.8
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.1e-155 551.6 670 51.6
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.1e-155 551.6 674 51.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-154 551.2 674 52.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.4e-154 550.1 666 52.0
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.1e-154 549.7 664 55.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.0e-154 549.3 679 52.3
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 8.9e-154 548.1 664 55.7
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-153 547.7 674 51.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.0e-153 547.0 671 51.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.6e-153 546.6 674 52.1
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.3e-152 544.3 667 52.9
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.9e-152 543.1 666 52.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.8e-152 542.7 672 51.9
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 4.9e-152 542.3 608 54.9
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 4.1e-151 539.3 667 52.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 4.1e-151 539.3 666 51.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 9.2e-151 538.1 654 50.2
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-150 537.7 669 52.8
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.5e-150 536.2 674 52.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 4.6e-150 535.8 662 51.2
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 6.0e-150 535.4 666 50.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.8e-150 535.0 666 52.0
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.0e-149 534.6 668 52.8
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.0e-149 534.6 675 49.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.7e-149 533.9 670 50.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.7e-149 533.9 665 50.8
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 2.3e-149 533.5 621 53.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 2.3e-149 533.5 621 53.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 8.6e-149 531.6 662 51.8
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.3e-148 529.6 679 52.9
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 5.6e-148 528.9 675 53.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.1e-147 526.9 664 50.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.1e-147 526.9 664 49.7
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.8e-146 523.9 660 50.3
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.1e-146 523.1 672 48.8
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 3.1e-146 523.1 673 48.4
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.5e-145 520.8 673 49.5
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.5e-145 520.8 675 49.5
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 2.0e-145 520.4 662 50.9
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.0e-145 520.4 653 50.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.4e-145 519.6 655 53.3
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 8.4e-144 515.0 663 48.9
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.1e-143 514.6 657 51.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.4e-143 513.5 661 47.8
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 2.4e-143 513.5 672 50.7
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.2e-143 513.1 669 50.1
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 9.3e-143 511.5 679 49.8
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-142 510.8 662 50.0
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.6e-142 510.8 673 49.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.7e-142 510.0 664 50.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.5e-142 509.6 672 49.7
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.8e-142 508.4 667 49.9
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.3e-141 507.7 659 53.4
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.9e-141 506.1 679 49.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.1e-141 505.8 674 50.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.5e-140 504.2 643 50.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.5e-140 504.2 653 48.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.5e-140 503.4 564 53.4
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.3e-140 503.1 654 49.4
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.3e-140 502.7 666 49.7
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.6e-140 502.3 675 52.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.6e-140 502.3 662 49.5
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.3e-139 501.1 668 52.2
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 8.1e-139 498.4 665 46.6
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.4e-138 497.7 655 49.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.1e-138 496.5 658 48.9
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.1e-138 496.5 663 47.1
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.0e-138 496.1 670 49.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.0e-138 496.1 668 51.8
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.0e-138 496.1 664 48.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.3e-138 495.7 665 50.5
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.3e-138 495.7 664 48.5
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-137 494.6 667 47.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.2e-137 494.6 666 50.0
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.0e-137 493.8 664 45.9
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 5.8e-137 492.3 534 53.7
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 9.9e-137 491.5 666 48.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 9.9e-137 491.5 668 48.7
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.3e-136 491.1 659 47.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.3e-136 491.1 697 47.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-136 491.1 665 46.2
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.9e-136 490.0 663 49.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.9e-136 490.0 669 48.1
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.2e-135 486.5 659 49.5
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.1e-134 483.8 655 49.2
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-134 483.8 664 45.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-134 482.3 659 48.0
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.9e-134 481.9 667 47.7
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 7.9e-134 481.9 667 49.3
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 7.9e-134 481.9 664 47.9
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-133 481.5 675 48.6
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-133 481.1 667 47.8
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 2.3e-133 480.3 655 47.8
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.9e-133 479.6 655 48.9
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 5.1e-133 479.2 662 48.5
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 5.1e-133 479.2 662 48.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 4.3e-132 476.1 655 48.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 4.3e-132 476.1 525 52.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.6e-132 475.7 670 50.1
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 7.4e-132 475.3 665 46.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 9.6e-132 474.9 659 48.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 9.6e-132 474.9 660 48.5
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.3e-131 474.6 659 47.3
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.6e-131 474.2 653 47.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.7e-131 473.0 673 48.1
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 5.3e-130 469.2 655 48.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.4e-129 466.5 650 45.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.8e-129 465.7 558 51.1
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.8e-129 465.7 558 51.1
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.9e-129 464.9 631 48.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 4.9e-128 462.6 657 47.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-127 461.1 655 48.1
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.6e-126 457.6 669 45.7
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.5e-126 456.4 569 50.4
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 7.9e-126 455.3 654 46.0
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.3e-125 454.5 668 44.2
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-125 453.8 656 43.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.9e-124 450.7 668 44.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.9e-124 450.7 673 45.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.3e-124 449.5 668 44.0
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 5.6e-124 449.1 671 46.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.6e-124 448.4 548 51.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.4e-122 443.7 656 45.7
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.9e-122 442.2 675 44.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 3.5e-118 429.9 671 43.5
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 8.2e-115 418.7 533 49.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.0e-112 411.8 676 42.5
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-112 411.4 685 43.8
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.8e-112 409.8 673 41.5
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 6.5e-112 409.1 563 44.9
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.2e-111 406.4 648 47.1
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 6.1e-110 402.5 667 42.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.5e-108 397.9 515 47.6
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 3.4e-105 386.7 659 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.1e-103 381.7 665 40.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 5.1e-101 372.9 663 41.0
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.8e-99 367.1 568 43.1
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.4e-95 352.1 679 39.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.3e-91 341.7 273 69.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.5e-76 291.6 667 34.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.8e-70 270.8 553 37.3
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 5.2e-69 266.5 410 45.1
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 3.7e-67 260.4 653 35.5
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 7.0e-66 256.1 406 44.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.2e-65 255.4 425 42.8
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.8e-64 250.4 231 60.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.0e-61 242.3 407 42.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.4e-58 231.9 263 52.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 4.0e-53 213.8 376 40.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.5e-52 211.8 304 44.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 7.3e-47 193.0 593 29.8
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.9e-42 178.3 641 31.0
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.0e-24 119.4 77 72.7
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.1e-24 117.1 109 51.4
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-22 112.5 142 50.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-21 109.0 107 49.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-18 98.6 226 43.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.2e-17 95.9 132 39.4
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 3.5e-17 94.4 77 59.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.3e-13 80.5 73 56.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.4e-12 77.8 78 55.1
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-11 74.7 61 50.8
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 8.4e-11 73.2 604 22.0
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 3.2e-10 71.2 61 59.0


User provided reference genes

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