Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 2149.0 1204 100.0
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1651.7 1209 76.3
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1332.8 1202 64.0
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1329.3 1218 63.2
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1328.9 1212 63.3
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1230 62.4
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1323.9 1224 62.9
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1323.5 1212 61.6
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1321.6 1216 62.6
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1321.2 1216 62.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1320.8 1207 63.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1320.4 1207 61.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1203 63.6
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1215 63.4
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1318.1 1212 63.0
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1315.4 1212 62.8
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1314.3 1216 62.4
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1313.9 1224 63.4
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1313.5 1219 61.7
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1312.7 1220 62.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1312.0 1216 62.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1310.4 1220 62.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1309.3 1206 62.9
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1303.9 1212 60.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1303.9 1214 60.3
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1303.5 1212 63.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1303.5 1212 63.1
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1301.6 1215 61.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1301.6 1214 62.1
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1300.8 1208 61.4
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1299.3 1207 63.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1299.3 1215 59.9
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1298.9 1211 60.8
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1295.8 1227 60.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1295.8 1204 59.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1295.4 1221 61.6
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1295.0 1214 59.6
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1294.3 1208 62.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1294.3 1206 61.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1294.3 1215 59.2
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1293.9 1208 62.2
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1293.1 1217 62.3
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1292.7 1201 62.1
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1292.7 1213 61.7
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1292.3 1207 61.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1292.3 1204 63.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1292.3 1219 61.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1291.6 1203 61.3
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1290.8 1203 61.8
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1290.0 1210 60.8
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1289.2 1237 60.8
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1287.7 1206 60.0
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1287.7 1232 59.4
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1287.7 1211 62.2
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1286.2 1206 61.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1285.4 1203 63.0
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1283.1 1215 59.1
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1282.7 1215 61.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1281.5 1203 63.0
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1281.2 1203 59.6
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1280.0 1203 63.0
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1278.8 1203 62.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1278.5 1205 60.6
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1278.5 1217 59.5
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1211 62.5
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1276.5 1203 62.9
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1276.2 1204 60.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1275.0 1255 57.2
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1273.5 1208 61.7
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1272.7 1255 57.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1271.9 1210 61.1
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1271.5 1204 63.0
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1268.4 1217 60.6
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1263.8 1214 60.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1262.3 1213 58.6
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1261.1 1226 60.8
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1260.0 1214 60.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1247.3 1214 60.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1244.6 1178 60.4
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1229.5 1272 56.6
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1222.6 1205 59.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1212.2 1208 59.7
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1206.0 1216 56.2
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1204.5 1223 56.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1197.6 1223 56.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1193.3 1210 56.7
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1078.5 1007 62.2
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 1.6e-310 1069.7 910 66.5
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 9.0e-309 1063.9 1285 50.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 4.6e-305 1051.6 1265 50.8
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.6e-297 1026.5 1273 49.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 4.6e-297 1025.0 1101 56.7
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 7.4e-287 991.1 761 67.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.0e-283 980.7 1217 50.6
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 8.5e-267 924.5 979 54.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.7e-246 855.9 1414 42.6
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.0e-243 847.8 765 59.6
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.7e-222 776.2 608 70.2
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.1e-220 770.4 609 67.2
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 5.3e-200 702.6 640 60.0
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.3e-198 698.0 537 67.8
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.9e-198 696.0 537 67.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.5e-191 672.9 537 65.7
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.6e-172 610.1 656 55.9
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.7e-166 591.3 606 58.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.5e-165 587.4 634 54.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 8.2e-161 572.4 1227 38.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.7e-142 511.5 597 52.1
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 6.5e-142 509.6 409 67.7
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 5.0e-134 483.4 586 52.7
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.4e-121 439.9 481 54.5
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.1e-116 424.9 584 54.6
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.9e-109 401.7 322 64.9
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 5.6e-109 400.2 337 64.4
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.4e-104 385.6 796 33.7
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.4e-104 383.6 577 45.6
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.5e-95 354.4 518 46.3
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-88 332.4 366 48.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.5e-82 312.4 1186 30.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.9e-82 309.7 376 50.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.4e-81 306.6 384 49.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-78 298.9 193 77.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.3e-78 298.5 255 58.0
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.6e-76 292.4 252 65.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.7e-65 255.8 218 67.4
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.2e-60 238.8 147 79.6
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-60 238.0 149 81.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.8e-60 237.7 450 40.0
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.5e-57 226.9 154 73.4
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 5.5e-56 224.2 243 56.8
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 3.1e-51 208.4 365 39.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-48 199.9 365 39.5
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-47 195.7 365 38.9
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.6e-47 194.9 365 39.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-46 193.0 113 84.1
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.3e-45 188.3 111 83.8
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 5.7e-45 187.6 113 82.3
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.2e-44 183.7 106 84.9
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-43 183.0 113 80.5
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-43 182.6 113 80.5
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.1e-43 180.3 215 47.9
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-41 175.3 109 81.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.3e-38 165.6 590 29.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 6.3e-36 157.5 106 76.4
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 7.0e-35 154.1 97 77.3
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.5e-34 151.8 99 76.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.9e-33 148.7 89 80.9
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.5e-32 144.4 123 59.3
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 4.4e-29 134.8 165 51.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.4e-29 134.8 82 81.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.8e-29 133.7 147 48.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 8.8e-22 110.5 73 80.8
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 9.8e-21 107.1 73 71.2
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 6.3e-20 104.4 75 72.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.8e-19 102.8 75 70.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.7e-17 96.3 85 58.8
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.5e-16 92.4 152 42.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 8.9e-14 84.0 205 36.6


User provided reference genes

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