Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb130030 Zea mays HOM05D000361 ORTHO05D443507 3.0e-47 191.4 93 100.0
Zm00001eb148840 Zea mays HOM05D000361 ORTHO05D442967 6.8e-47 190.3 93 98.9
Zm00001eb290510 Zea mays HOM05D000361 ORTHO05D007313 6.8e-47 190.3 93 98.9
Zm00001eb342210 Zea mays HOM05D000361 ORTHO05D444829 6.8e-47 190.3 93 98.9
Zm00001eb351990 Zea mays HOM05D000361 ORTHO05D007313 7.5e-46 186.8 93 95.7
Os05g0476200 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D007313 9.8e-46 186.4 93 96.8
Zm00001eb215770 Zea mays HOM05D000361 ORTHO05D442938 6.2e-40 167.2 83 97.6
Zm00001eb243240 Zea mays HOM05D000361 ORTHO05D444302 6.2e-40 167.2 83 97.6
MBI10_g21116_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D007313 1.6e-27 125.9 96 68.8
Lalb_Chr07g0188661 Lupinus albus HOM05D000361 ORTHO05D007313 8.1e-24 113.6 95 57.9
VMungo1309G0878 Vigna mungo HOM05D000361 ORTHO05D007313 8.1e-24 113.6 95 62.1
Aqoxy1G01748 Aquilegia oxysepala HOM05D000361 ORTHO05D007313 1.1e-23 113.2 94 62.8
FvH4_3g05860 Fragaria vesca HOM05D000361 ORTHO05D007313 1.8e-23 112.5 94 61.7
FAN11G2321 Fragaria x ananassa HOM05D000736 ORTHO05D007313 1.8e-23 112.5 94 61.7
FAN16G3703 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.8e-23 112.5 94 61.7
FAN21G3930 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.8e-23 112.5 94 61.7
RcHm_v2.0_Chr5g0013661 Rosa chinensis HOM05D000361 ORTHO05D007313 1.8e-23 112.5 94 61.7
Thecc.06G152900 Theobroma cacao HOM05D000361 ORTHO05D007313 3.1e-23 111.7 95 62.1
Cpa.g.sc166.27 Carica papaya HOM05D000361 ORTHO05D007313 5.2e-23 110.9 95 62.1
MD05G1286600 Malus domestica HOM05D000361 ORTHO05D007313 5.2e-23 110.9 94 59.6
TAR626G0055 Trochodendron aralioides HOM05D000361 ORTHO05D007313 5.2e-23 110.9 95 62.1
CDE02G2269 Ceratophyllum demersum HOM05D000361 ORTHO05D007313 8.9e-23 110.2 93 62.4
Lj4g0025504 Lotus japonicus HOM05D000361 ORTHO05D007313 8.9e-23 110.2 95 58.9
FAN25G1702 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.2e-22 109.8 93 60.2
THA.LOC104806124 Tarenaya hassleriana HOM05D000361 ORTHO05D007313 1.2e-22 109.8 93 60.2
Duzib160G0935 Durio zibethinus HOM05D000361 ORTHO05D007313 1.5e-22 109.4 95 61.1
Manes.15G120100 Manihot esculenta HOM05D000361 ORTHO05D007313 1.5e-22 109.4 95 60.0
Manes.17G068400 Manihot esculenta HOM05D000361 ORTHO05D007313 1.5e-22 109.4 95 60.0
Phvul.002G194200 Phaseolus vulgaris HOM05D000361 ORTHO05D007313 1.5e-22 109.4 95 60.0
QL05p058975 Quercus lobata HOM05D000361 ORTHO05D007313 1.5e-22 109.4 94 62.8
Dinv32273 Davidia involucrata HOM05D000361 ORTHO05D007313 2.0e-22 109.0 95 58.9
arahy.Tifrunner.gnm1.ann1.7J68PP Arachis hypogaea HOM05D000361 ORTHO05D007313 2.6e-22 108.6 95 57.9
arahy.Tifrunner.gnm1.ann1.I8W9P3 Arachis hypogaea HOM05D000361 ORTHO05D007313 2.6e-22 108.6 95 57.9
Eucgr.E02391 Eucalyptus grandis HOM05D000361 ORTHO05D007313 2.6e-22 108.6 93 58.1
Gohir.A10G039500 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.6e-22 108.6 95 60.0
Gohir.D10G040300 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.6e-22 108.6 95 60.0
Gorai.011G042400 Gossypium raimondii HOM05D000361 ORTHO05D007313 2.6e-22 108.6 95 60.0
Prupe.4G078300 Prunus persica HOM05D000361 ORTHO05D007313 2.6e-22 108.6 94 58.5
CSS0047698 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007313 3.4e-22 108.2 95 58.9
AUR62027610 Chenopodium quinoa HOM05D000361 ORTHO05D007313 3.4e-22 108.2 94 57.4
Sabra04G0086300 Salix brachista HOM05D000361 ORTHO05D007313 3.4e-22 108.2 94 60.6
Hund21521 Selenicereus undatus HOM05D000361 ORTHO05D007313 3.4e-22 108.2 95 58.9
Gohir.D05G152200 Gossypium hirsutum HOM05D000361 ORTHO05D007313 4.4e-22 107.8 95 58.9
Gorai.009G156300 Gossypium raimondii HOM05D000361 ORTHO05D007313 4.4e-22 107.8 95 58.9
Potri.004G131600 Populus trichocarpa HOM05D000361 ORTHO05D007313 4.4e-22 107.8 94 59.6
SalBow7G1169 Salvia bowleyana HOM05D000361 ORTHO05D007313 4.4e-22 107.8 94 61.7
GSVIVG01021426001 Vitis vinifera HOM05D000361 ORTHO05D007313 4.4e-22 107.8 94 58.5
Glyma.08G084400 Glycine max HOM05D000361 ORTHO05D007313 7.6e-22 107.1 95 57.9
MD10G1264100 Malus domestica HOM05D000361 ORTHO05D007313 7.6e-22 107.1 94 57.4
vmacro22572 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 7.6e-22 107.1 95 56.8
Duzib192G0960 Durio zibethinus HOM05D000361 ORTHO05D007313 9.9e-22 106.7 95 60.0
Sc17g0004990 Simmondsia chinensis HOM05D000361 ORTHO05D007313 9.9e-22 106.7 94 59.6
SGA_v2.0_scaffold51G18635 Striga asiatica HOM05D000361 ORTHO05D007313 9.9e-22 106.7 94 61.7
MSTRG.14768 Avicennia marina HOM05D000361 ORTHO05D007313 1.3e-21 106.3 94 60.6
Ciclev10017750m.g Citrus clementina HOM05D000361 ORTHO05D007313 1.7e-21 105.9 95 58.9
COL.COLO4_38291 Corchorus olitorius HOM05D000361 ORTHO05D007313 1.7e-21 105.9 94 57.4
Nn3g20692 Nelumbo nucifera HOM05D000361 ORTHO05D007313 1.7e-21 105.9 94 59.6
Oeu052381.3 Olea europaea HOM05D000361 ORTHO05D007313 1.7e-21 105.9 95 60.0
Ca_18269_v3 Cicer arietinum L. HOM05D000361 ORTHO05D007313 2.2e-21 105.5 95 58.9
Medtr4g096700 Medicago truncatula HOM05D000361 ORTHO05D007313 2.2e-21 105.5 95 58.9
Psat7g090360 Pisum sativum HOM05D000361 ORTHO05D007313 2.2e-21 105.5 95 58.9
TWI73G0468 Tripterygium wilfordii HOM05D000361 ORTHO05D007313 2.2e-21 105.5 95 61.1
Haze_05571 Corylus avellana HOM05D000361 ORTHO05D007313 2.9e-21 105.1 95 60.0
EL10As10g23969 Beta vulgaris HOM05D000361 ORTHO05D007313 3.7e-21 104.8 94 56.4
AUR62030235 Chenopodium quinoa HOM05D000361 ORTHO05D007313 3.7e-21 104.8 94 56.4
Gohir.A05G149600 Gossypium hirsutum HOM05D000361 ORTHO05D007313 3.7e-21 104.8 95 57.9
SGA_v2.0_scaffold106G30638 Striga asiatica HOM05D000361 ORTHO05D007313 3.7e-21 104.8 94 60.6
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 4.9e-21 104.4 94 56.4
Hma1.2p1_0259F.1_g104280 Hydrangea macrophylla HOM05D000361 ORTHO05D007313 4.9e-21 104.4 95 55.8
PGR042G0058 Punica granatum HOM05D000361 ORTHO05D007313 4.9e-21 104.4 95 57.9
ClCG01G024510 Citrullus lanatus HOM05D000361 ORTHO05D007313 6.4e-21 104.0 94 59.6
Glyma.05G129700 Glycine max HOM05D000361 ORTHO05D007313 6.4e-21 104.0 95 55.8
Rhsim13G0194100 Rhododendron simsii HOM05D000361 ORTHO05D007313 6.4e-21 104.0 95 54.7
CiPaw.10G092900 Carya illinoinensis HOM05D000361 ORTHO05D007313 8.4e-21 103.6 95 58.9
Actinidia16720 Actinidia chinensis HOM05D000361 ORTHO05D007313 1.1e-20 103.2 95 55.8
Sed0015619 Sechium edule HOM05D000361 ORTHO05D007313 1.9e-20 102.4 94 58.5
DCAR_027944 Daucus carota HOM05D000361 ORTHO05D007313 2.4e-20 102.1 95 56.8
Migut.H01371 Erythranthe guttata HOM05D000361 ORTHO05D007313 2.4e-20 102.1 97 60.8
Solyc02g070780.4 Solanum lycopersicum HOM05D000361 ORTHO05D007313 2.4e-20 102.1 94 56.4
Sopen02g019850 Solanum pennellii HOM05D000361 ORTHO05D007313 2.4e-20 102.1 94 56.4
PGSC0003DMG400008308 Solanum tuberosum HOM05D000361 ORTHO05D007313 2.4e-20 102.1 94 56.4
ATR0693G231 Amborella trichopoda HOM05D000361 ORTHO05D007313 3.2e-20 101.7 97 57.7
MELO3C007144.2 Cucumis melo HOM05D000361 ORTHO05D007313 3.2e-20 101.7 94 58.5
CANSAT35G0708 Cannabis sativa HOM05D000361 ORTHO05D007313 4.1e-20 101.3 95 56.8
CAN.G650.47 Capsicum annuum HOM05D000361 ORTHO05D007313 4.1e-20 101.3 94 56.4
Cc00_g11120 Coffea canephora HOM05D000361 ORTHO05D007313 4.1e-20 101.3 93 57.0
Lj1A1185G63 Lonicera japonica HOM05D000361 ORTHO05D007313 4.1e-20 101.3 94 57.4
CsaV3_6G051630 Cucumis sativus L. HOM05D000361 ORTHO05D007313 5.4e-20 100.9 94 58.5
HanXRQChr04g0118381 Helianthus annuus HOM05D000361 ORTHO05D007313 5.4e-20 100.9 95 56.8
unitig_21.g20642 Utricularia gibba HOM05D000361 ORTHO05D007313 1.2e-19 99.8 93 55.9
ECA236G2001 Erigeron canadensis HOM05D000361 ORTHO05D007313 1.6e-19 99.4 94 56.4
CARHR175520 Cardamine hirsuta HOM05D000361 ORTHO05D007313 2.1e-19 99.0 93 58.1
Nitab4.5_0001040g0140 Nicotiana tabacum HOM05D000361 ORTHO05D007313 2.1e-19 99.0 93 54.8
PSO675G5964 Papaver somniferum HOM05D000361 ORTHO05D007313 2.7e-19 98.6 93 54.8
Peaxi162Scf00796g00120 Petunia axillaris HOM05D000361 ORTHO05D007313 3.5e-19 98.2 94 55.3
Atru.chr10.1316 Acer truncatum HOM05D000361 ORTHO05D007313 4.6e-19 97.8 95 57.9
HPP92_019175 Vanilla planifolia HOM05D000106 ORTHO05D001887 4.6e-19 97.8 60 73.3
vmacro09958 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 6.0e-19 97.4 95 55.8
BcaC06g31485 Brassica carinata HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 55.9
A06p46030 Brassica napus HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 55.9
C07p29500 Brassica napus HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 55.9
BolC7t43499H Brassica oleracea HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 55.9
BraA06t27467Z Brassica rapa HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 55.9
Thhalv10000786m.g Eutrema salsugineum HOM05D000361 ORTHO05D007313 7.8e-19 97.1 93 57.0
Nitab4.5_0018875g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007313 1.0e-18 96.7 93 53.8
SEGI_24709 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 1.0e-18 96.7 102 53.9
SEGI_26759 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 1.0e-18 96.7 102 53.9
PSO541G6449 Papaver somniferum HOM05D000361 ORTHO05D007313 1.3e-18 96.3 93 54.8
Sp2g11130 Schrenkiella parvula HOM05D000361 ORTHO05D007313 1.3e-18 96.3 93 57.0
BcaC03g16842 Brassica carinata HOM05D000361 ORTHO05D007313 1.7e-18 95.9 93 55.9
A02p29810 Brassica napus HOM05D000361 ORTHO05D007313 1.7e-18 95.9 94 55.3
C02p47220 Brassica napus HOM05D000361 ORTHO05D007313 1.7e-18 95.9 93 55.9
BolC2t10766H Brassica oleracea HOM05D000361 ORTHO05D007313 1.7e-18 95.9 93 55.9
BraA02t08002Z Brassica rapa HOM05D000361 ORTHO05D007313 1.7e-18 95.9 94 55.3
Lsat_1_v5_gn_7_30521 Lactuca sativa HOM05D000361 ORTHO05D007313 3.0e-18 95.1 93 53.8
Aa31LG9G6610 Aethionema arabicum HOM05D000361 ORTHO05D007313 3.9e-18 94.7 93 57.0
Mapoly0001s0105 Marchantia polymorpha HOM05D000361 ORTHO05D007313 3.9e-18 94.7 99 54.5
Pp3c20_6190 Physcomitrium patens HOM05D000361 ORTHO05D007313 6.6e-18 94.0 96 53.1
Lj4g0014780 Lotus japonicus HOM05D000361 ORTHO05D007313 8.6e-18 93.6 95 53.7
Cc08_g06660 Coffea canephora HOM05D000361 ORTHO05D007313 2.5e-17 92.0 93 51.6
CBR_g40405 Chara braunii HOM05D000361 ORTHO05D007313 5.6e-17 90.9 96 51.0
AL8G12180 Arabidopsis lyrata HOM05D000361 ORTHO05D007313 3.6e-16 88.2 93 54.8
RcHm_v2.0_Chr5g0013601 Rosa chinensis HOM05D000361 ORTHO05D007313 3.6e-16 88.2 93 52.7
AT5G46280 Arabidopsis thaliana HOM05D000361 ORTHO05D007313 2.4e-15 85.5 93 53.8
SMO118G0248 Selaginella moellendorffii HOM05D000361 ORTHO05D007313 5.2e-15 84.3 101 45.5
Carub.0008s0163 Capsella rubella HOM05D000361 ORTHO05D007313 3.4e-14 81.6 93 51.6
DCAR_005114 Daucus carota HOM05D000361 ORTHO05D007313 3.2e-12 75.1 95 47.4
Cc09_g02220 Coffea canephora HOM05D000361 ORTHO05D007313 3.0e-10 68.6 93 43.0
PRCOL_00006492 Prasinoderma coloniale HOM05D000361 ORTHO05D007313 4.3e-09 64.7 95 42.1
vmacro22573 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 6.9e-07 57.4 82 42.7
SMO199G0064 Selaginella moellendorffii HOM05D000361 ORTHO05D377501 5.8e-06 54.3 80 38.8


User provided reference genes

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