Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 5.9e-278 961.1 865 100.0
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.8e-201 705.3 868 71.5
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 8.9e-141 505.4 550 66.7
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.1e-121 441.0 511 56.8
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.0e-120 438.7 515 58.8
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.3e-120 438.3 498 62.7
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.3e-120 438.3 514 58.9
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 6.6e-120 436.0 501 57.1
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 8.6e-120 435.6 493 56.6
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.6e-120 435.6 545 58.2
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.9e-119 434.5 501 57.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.9e-119 434.5 514 57.8
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.9e-119 434.5 513 57.7
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.6e-119 433.0 498 61.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 9.5e-119 432.2 524 59.0
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.5e-119 432.2 536 54.7
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 9.5e-119 432.2 498 62.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 9.5e-119 432.2 495 60.6
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.1e-118 431.0 500 56.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.1e-118 429.1 509 55.4
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.2e-116 425.2 512 55.9
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.0e-116 424.5 512 53.9
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.0e-116 424.5 493 58.4
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.6e-116 424.1 548 57.5
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 4.4e-116 423.3 513 57.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 7.6e-116 422.5 515 52.8
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 9.9e-116 422.2 538 55.9
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 9.9e-116 422.2 496 57.9
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 9.9e-116 422.2 506 53.2
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.7e-115 421.4 519 53.9
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.9e-115 420.6 510 56.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.9e-115 420.6 504 58.9
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 3.7e-115 420.2 504 54.4
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 4.9e-115 419.9 504 58.7
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 4.9e-115 419.9 499 54.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 6.4e-115 419.5 500 57.0
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 8.4e-115 419.1 496 55.2
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 8.4e-115 419.1 491 52.5
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.1e-114 418.7 515 56.7
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.1e-114 418.7 498 52.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 2.4e-114 417.5 501 58.3
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.4e-114 417.5 497 60.8
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.2e-114 417.2 504 59.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 3.2e-114 417.2 545 52.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 4.1e-114 416.8 507 54.8
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 4.1e-114 416.8 512 53.3
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 7.1e-114 416.0 511 55.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 9.2e-114 415.6 500 54.4
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.2e-114 415.6 509 56.0
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.2e-113 415.2 509 55.0
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 2.1e-113 414.5 499 51.9
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-113 414.1 498 52.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.3e-112 411.8 509 53.4
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.3e-112 411.8 505 52.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.3e-112 411.8 503 49.3
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.7e-112 411.4 494 56.7
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.7e-112 411.4 511 59.1
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.3e-112 411.0 487 56.3
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 3.0e-112 410.6 501 55.3
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.9e-112 410.2 506 54.9
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 6.6e-112 409.5 502 56.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 8.6e-112 409.1 509 55.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-111 408.7 511 52.3
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.9e-111 407.9 518 54.1
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.9e-111 407.9 546 56.4
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 2.5e-111 407.5 513 58.9
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 4.3e-111 406.8 520 51.9
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.3e-111 406.0 507 53.5
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.6e-110 404.8 514 53.5
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.6e-110 404.8 501 54.3
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.1e-110 404.4 491 51.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.1e-110 404.4 510 56.3
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 2.1e-110 404.4 517 51.3
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 4.7e-110 403.3 517 59.2
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.2e-110 402.9 506 56.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.4e-109 401.7 513 53.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 8.9e-109 399.1 546 48.5
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.2e-108 398.7 522 48.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.5e-108 398.3 497 52.9
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 5.8e-108 396.4 496 56.7
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.8e-108 396.4 496 56.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.8e-108 396.4 496 56.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.8e-108 396.4 495 54.1
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.6e-108 396.0 496 56.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.6e-108 396.0 542 48.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 9.9e-108 395.6 522 48.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 9.9e-108 395.6 522 48.9
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.3e-107 395.2 545 51.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-107 395.2 522 48.7
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 1.3e-107 395.2 499 53.3
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.9e-107 394.0 522 48.7
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 6.4e-107 392.9 548 52.0
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.4e-107 392.5 514 52.9
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.9e-106 391.3 492 51.4
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 8.7e-104 382.5 536 51.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.1e-103 382.1 516 58.7
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 4.3e-103 380.2 516 58.5
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.1e-101 374.0 493 53.8
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.2e-98 364.0 548 52.2
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 6.6e-96 356.3 486 50.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 3.6e-94 350.5 507 52.1
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 5.8e-92 343.2 406 56.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 4.8e-86 323.6 518 52.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 8.4e-75 286.2 292 55.1
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.0e-68 265.0 294 51.7
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 5.5e-66 256.9 347 55.6
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 7.2e-66 256.5 309 60.5
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 7.4e-63 246.5 544 41.2
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-58 232.6 212 53.8
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 6.3e-54 216.9 511 38.7
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.8e-51 207.6 499 36.9
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.6e-49 202.2 498 36.5
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 8.2e-46 189.9 188 58.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 3.8e-43 181.0 232 47.4
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.6e-39 168.3 257 44.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.4e-37 162.5 175 54.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-37 160.6 276 46.0
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.9e-35 154.8 171 60.8
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.8e-35 154.5 496 35.5
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.2e-34 151.4 165 61.2
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 9.5e-34 149.8 205 46.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.7e-33 148.3 174 61.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.0e-19 103.2 109 49.5
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.7e-19 102.4 400 36.5
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.8e-16 92.4 105 50.5
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.0e-15 89.0 92 54.3
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.7e-14 85.9 58 67.2
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 8.6e-11 73.6 61 54.1
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.6e-10 70.9 148 41.9
MCO16G044 Micromonas commoda HOM05D014086 ORTHO05D006295 2.3e-08 65.5 135 37.0
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-08 65.1 102 47.1
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 8.9e-08 63.5 86 51.2
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.6e-07 62.0 109 40.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 7.5e-07 60.5 109 42.2


User provided reference genes

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