Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.6e-155 553.5 494 100.0
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 6.5e-104 382.1 402 79.6
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.4e-77 294.7 168 87.5
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.8e-75 286.2 400 57.8
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.4e-74 284.6 405 57.3
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.8e-74 284.3 405 51.4
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.8e-74 284.3 400 52.8
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-73 279.6 400 52.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 7.7e-73 278.9 400 52.0
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.7e-72 277.7 409 51.3
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.7e-72 277.7 412 56.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.7e-70 270.4 400 56.0
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 4.7e-70 269.6 399 51.6
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 6.1e-70 269.2 406 54.4
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 8.0e-70 268.9 408 57.6
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 1.8e-69 267.7 402 51.2
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 4.0e-69 266.5 410 55.4
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 8.8e-69 265.4 408 59.8
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.2e-68 265.0 400 51.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.7e-68 262.7 401 52.4
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 7.5e-68 262.3 433 47.8
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 7.5e-68 262.3 404 54.5
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.3e-67 261.5 403 56.3
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.7e-67 261.2 410 54.1
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 2.8e-67 260.4 399 45.9
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.3e-67 259.2 406 54.4
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.4e-66 258.1 394 47.2
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.4e-66 258.1 404 45.8
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.4e-66 258.1 370 54.1
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.4e-66 258.1 400 60.2
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.4e-66 258.1 406 54.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.8e-66 257.7 402 58.0
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.8e-66 257.7 401 52.1
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.8e-66 257.7 415 58.8
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 3.1e-66 256.9 397 60.2
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 4.1e-66 256.5 409 58.4
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 5.3e-66 256.1 410 49.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 7.0e-66 255.8 398 51.8
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 9.1e-66 255.4 421 52.3
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 9.1e-66 255.4 400 48.5
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 9.1e-66 255.4 411 49.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.2e-65 255.0 417 54.7
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.2e-65 255.0 400 58.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.7e-65 253.8 404 50.7
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.2e-64 250.8 416 52.2
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 2.9e-64 250.4 409 52.1
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 2.9e-64 250.4 399 56.9
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 6.5e-64 249.2 408 58.1
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.5e-63 248.1 404 49.3
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.5e-63 248.1 402 43.0
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.5e-63 247.3 401 60.3
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.5e-63 247.3 413 48.7
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.2e-63 246.9 401 52.6
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 4.2e-63 246.5 418 50.0
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.2e-63 246.5 363 50.7
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 9.4e-63 245.4 274 56.6
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.2e-62 245.0 399 46.9
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.7e-62 243.8 400 57.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 2.7e-62 243.8 421 53.9
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.3e-61 240.7 411 53.8
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 3.0e-61 240.4 403 54.6
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 6.8e-61 239.2 406 49.5
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 4.4e-60 236.5 414 47.8
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 7.5e-60 235.7 277 61.0
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 9.8e-60 235.3 405 59.8
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-59 235.0 401 52.9
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.3e-59 235.0 414 52.2
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.3e-59 235.0 417 46.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 1.7e-59 234.6 420 44.8
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.7e-59 234.6 363 60.1
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.2e-59 234.2 377 53.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 2.8e-59 233.8 403 59.1
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.7e-59 233.4 401 57.9
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 3.7e-59 233.4 403 54.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 4.8e-59 233.0 412 51.2
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 8.3e-59 232.3 416 47.4
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.1e-58 231.9 422 51.2
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.8e-58 231.1 401 51.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.8e-58 231.1 399 58.1
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 3.1e-58 230.3 406 47.8
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.1e-58 230.3 404 59.9
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 3.1e-58 230.3 394 54.3
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 5.4e-58 229.6 384 53.4
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 5.4e-58 229.6 404 58.7
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 7.0e-58 229.2 364 42.9
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.2e-57 228.4 411 49.4
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.2e-57 228.4 403 49.4
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.6e-57 228.0 417 48.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.6e-57 228.0 365 52.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.6e-57 228.0 432 56.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.7e-57 227.3 400 48.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 5.9e-57 226.1 409 57.7
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.3e-56 224.9 401 51.4
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.3e-56 224.9 404 57.2
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.7e-56 224.6 403 55.3
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.7e-56 224.6 400 55.5
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.7e-56 224.6 400 55.5
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 5.0e-56 223.0 246 65.9
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 5.0e-56 223.0 400 61.8
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 6.6e-56 222.6 399 61.4
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 2.5e-55 220.7 381 45.9
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.3e-55 220.3 401 60.3
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.5e-55 219.5 399 60.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 7.2e-55 219.2 379 49.6
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 7.2e-55 219.2 374 52.9
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.1e-54 217.6 402 56.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 2.1e-54 217.6 410 48.0
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.4e-53 214.9 404 50.0
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 6.8e-53 212.6 431 43.9
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.2e-52 211.8 396 58.1
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.5e-52 211.5 394 54.6
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.8e-52 208.8 412 52.4
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.3e-51 208.4 402 52.7
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 2.8e-51 207.2 274 63.5
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 8.3e-51 205.7 402 48.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.4e-50 204.9 412 50.7
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.8e-50 204.5 431 45.9
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 9.2e-50 202.2 277 52.0
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 9.2e-50 202.2 267 56.9
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.6e-49 201.4 367 51.8
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.6e-49 201.4 398 49.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.5e-49 199.9 400 49.8
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.3e-47 193.4 230 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 5.6e-47 193.0 167 63.5
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.3e-45 187.6 389 45.5
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.8e-45 186.0 411 51.3
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.8e-45 186.0 411 51.3
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.0e-44 184.5 377 48.0
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 7.5e-44 182.6 160 63.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 9.8e-44 182.2 377 48.0
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 2.2e-43 181.0 119 70.6
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.6e-41 174.9 401 46.4
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.0e-40 172.2 156 63.5
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-40 171.8 414 46.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 8.6e-40 169.1 142 66.2
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.6e-38 163.7 370 44.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 7.5e-36 156.0 193 51.3
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.2e-33 148.7 353 37.1
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.3e-32 145.2 102 75.5
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 3.7e-27 127.1 328 39.0
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 4.6e-25 120.2 107 59.8
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 6.0e-25 119.8 107 58.9
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-24 117.9 97 64.9
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.9e-23 114.8 326 37.4
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.5e-23 114.4 297 38.4
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 5.2e-21 106.7 284 41.9
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 2.9e-19 100.9 90 46.7
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 3.2e-18 97.4 51 82.4
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.2e-18 97.4 294 38.1
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 9.0e-13 79.3 174 36.2
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-08 65.9 277 37.2
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.3e-08 65.5 45 64.4
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.3e-08 64.7 94 37.2
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 3.0e-08 64.3 92 40.2
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.5e-07 62.0 31 74.2
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 4.3e-07 60.5 107 36.4
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 9.6e-07 59.3 95 36.8
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.3e-06 58.9 119 34.5
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.6e-06 58.5 113 34.5
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 2.1e-06 58.2 96 40.6
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 3.6e-06 57.4 92 37.0
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.6e-06 57.4 35 65.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 6.2e-06 56.6 32 68.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 6.2e-06 56.6 32 68.8
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 6.2e-06 56.6 26 80.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 6.2e-06 56.6 26 80.8
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 8.1e-06 56.2 32 65.6


User provided reference genes

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