Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 0.0e+00 1259.2 665 100.0
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 0.0e+00 1111.3 688 87.1
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.8e-275 951.8 696 75.4
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.4e-172 609.0 709 52.8
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 4.8e-171 605.5 708 52.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.4e-170 604.0 725 53.1
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 4.1e-170 602.4 724 51.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 9.1e-170 601.3 712 52.4
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.2e-169 600.9 726 51.5
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 4.5e-169 599.0 708 52.3
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 7.7e-169 598.2 716 53.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 2.2e-168 596.7 729 52.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.5e-168 595.1 731 52.7
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.5e-167 594.0 713 53.0
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.1e-166 588.6 711 51.6
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 6.1e-166 588.6 713 52.0
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.0e-165 587.8 713 50.9
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 3.0e-165 586.3 707 51.1
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.0e-165 585.9 709 51.8
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.2e-165 585.5 712 52.1
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-164 584.3 715 51.6
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.0e-164 583.6 718 51.9
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.3e-163 580.9 716 52.4
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 6.3e-163 578.6 732 50.7
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 8.3e-163 578.2 716 51.8
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.1e-162 577.8 715 50.6
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.1e-162 577.8 706 51.1
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.8e-162 577.0 720 50.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.8e-162 577.0 714 51.7
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.1e-162 576.2 715 51.5
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 3.1e-162 576.2 724 49.6
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 5.4e-162 575.5 713 52.0
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.4e-162 575.5 718 51.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 7.0e-162 575.1 709 51.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.1e-162 574.7 716 50.1
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.6e-161 573.9 718 50.4
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.7e-161 573.2 705 49.6
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 3.5e-161 572.8 712 50.3
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 5.9e-161 572.0 706 49.6
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 5.9e-161 572.0 706 49.6
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.3e-160 570.1 712 51.4
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 5.0e-160 568.9 716 50.3
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 6.6e-160 568.5 714 51.4
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.6e-160 568.5 714 50.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.1e-159 567.8 722 50.4
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.5e-159 567.4 707 49.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.9e-159 567.0 707 50.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.9e-159 567.0 717 51.0
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 5.5e-159 565.5 727 50.3
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 9.5e-159 564.7 703 49.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.2e-158 564.3 707 49.8
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.2e-158 564.3 706 49.3
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.1e-158 563.5 721 50.5
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 2.1e-158 563.5 709 50.9
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 4.7e-158 562.4 705 48.9
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 8.0e-158 561.6 706 49.2
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.0e-157 561.2 708 49.2
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.8e-157 560.5 715 50.2
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.3e-157 560.1 717 50.6
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.3e-157 560.1 716 51.5
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.0e-157 559.7 705 49.1
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 4.0e-157 559.3 708 50.7
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.0e-157 559.3 709 50.4
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 6.8e-157 558.5 714 50.7
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.8e-157 558.5 697 49.8
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.2e-156 557.8 710 50.3
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.0e-156 557.0 715 49.9
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 2.6e-156 556.6 707 48.9
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.4e-156 556.2 736 49.5
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 5.7e-156 555.4 714 49.4
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 7.5e-156 555.1 715 50.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.7e-155 553.9 716 49.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.8e-155 553.1 722 49.3
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 4.9e-155 552.4 710 49.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.3e-155 552.0 705 49.2
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 8.3e-155 551.6 705 48.7
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.8e-154 550.4 707 47.9
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.8e-154 550.4 708 49.0
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 2.4e-154 550.1 704 50.0
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.4e-154 550.1 712 50.0
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 4.1e-154 549.3 726 49.4
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 2.7e-153 546.6 712 49.0
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.9e-153 545.4 707 50.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.0e-152 544.7 713 50.2
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.3e-152 544.3 713 49.9
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.3e-152 543.5 711 49.2
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.3e-152 543.5 708 49.4
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.6e-152 542.0 709 49.4
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.6e-152 542.0 711 49.1
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.1e-151 541.2 711 48.9
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.3e-151 539.3 702 50.6
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 4.3e-151 539.3 709 48.7
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 4.3e-151 539.3 714 48.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 7.3e-151 538.5 718 49.3
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 9.5e-151 538.1 716 50.0
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 2.1e-150 537.0 711 47.0
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 3.6e-150 536.2 707 48.8
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.7e-150 535.8 718 49.9
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.3e-149 533.5 700 49.1
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.3e-149 533.5 715 48.7
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.1e-149 533.1 713 48.5
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 5.2e-149 532.3 718 48.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 4.4e-148 529.3 728 47.4
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.4e-146 524.2 706 47.9
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.2e-146 523.1 714 48.5
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.4e-146 522.3 703 49.1
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 5.0e-144 515.8 714 48.3
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.1e-143 514.6 707 48.2
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 2.5e-143 513.5 728 45.9
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 5.6e-143 512.3 714 48.3
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.9e-138 497.3 722 47.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 5.4e-138 495.7 728 46.6
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.3e-136 490.3 711 46.3
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 2.3e-136 490.3 721 44.8
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.3e-133 480.3 877 40.8
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.0e-132 477.2 692 46.8
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.3e-131 474.6 715 46.3
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 2.9e-131 473.4 695 47.3
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.1e-129 467.2 714 45.8
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.7e-129 466.8 692 44.1
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 9.6e-127 458.4 709 43.6
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 6.8e-125 452.2 718 42.8
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.4e-122 444.5 377 61.3
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.4e-122 444.5 377 61.3
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 9.3e-122 441.8 383 63.7
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 8.7e-120 435.3 736 41.4
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 9.6e-119 431.8 636 46.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.0e-117 425.2 378 61.9
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.8e-109 401.0 325 68.0
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 9.0e-109 398.7 324 68.2
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-99 368.2 687 41.5
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.1e-93 348.6 708 37.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.9e-90 337.8 739 37.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 3.3e-87 327.0 773 36.2
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.7e-86 323.6 518 42.3
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 8.8e-80 302.4 547 43.0
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 7.7e-76 289.3 607 38.4
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.2e-68 265.4 614 36.6
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.1e-65 253.1 255 58.0
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 8.5e-59 232.6 483 39.3
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.8e-56 223.0 607 32.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.4e-53 215.3 346 42.8
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 4.2e-50 203.8 389 40.1
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.9e-46 190.3 154 64.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 5.9e-44 183.3 243 45.7
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 7.7e-44 183.0 392 38.8
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-39 168.3 390 37.7
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.6e-39 167.9 153 54.2
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 7.5e-39 166.4 89 98.9
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.2e-33 149.1 414 30.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.7e-30 138.7 391 30.2
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-29 134.8 171 53.2
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.5e-26 124.8 183 49.7
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 8.9e-24 116.3 69 78.3
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-23 115.5 69 81.2
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.9e-19 100.9 62 74.2
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.5e-18 99.0 313 32.6
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.9e-18 98.6 495 26.5
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.6e-17 94.4 57 77.2
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 4.4e-15 87.4 51 80.4
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 4.4e-15 87.4 86 51.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 3.7e-14 84.3 51 78.4
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.4e-13 82.4 255 31.4
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.9e-13 82.0 324 29.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 3.2e-13 81.3 61 68.9
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.8e-09 68.2 59 54.2
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.8e-09 68.2 116 33.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.1e-08 66.2 349 27.2
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-07 62.8 89 46.1
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.4e-06 57.0 89 44.9


User provided reference genes

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