Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.3e-105 385.6 195 100.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 1.3e-103 379.8 194 99.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.9e-91 339.3 182 96.7
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 5.4e-78 294.7 185 81.6
Zm00001eb115580 Zea mays HOM05D003625 ORTHO05D037860 4.6e-45 185.3 104 90.4
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.9e-17 91.7 95 49.5
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 9.0e-17 91.3 73 60.3
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 2.6e-16 89.7 129 42.6
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.4e-16 89.4 88 53.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 3.4e-16 89.4 73 58.9
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 4.5e-16 89.0 73 57.5
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.5e-16 89.0 85 52.9
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 5.8e-16 88.6 200 34.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.7e-15 87.0 90 50.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.2e-15 86.7 88 52.3
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 2.9e-15 86.3 95 47.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 2.9e-15 86.3 85 50.6
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.9e-15 85.5 82 52.4
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.4e-15 84.7 93 50.5
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 8.4e-15 84.7 208 30.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 8.4e-15 84.7 119 39.5
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.1e-14 84.3 79 54.4
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.4e-14 84.0 117 41.0
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.4e-14 84.0 73 53.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-14 83.2 127 38.6
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.4e-14 83.2 191 33.5
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.2e-14 82.8 163 37.4
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.2e-14 82.4 72 50.0
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 4.2e-14 82.4 72 50.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.5e-14 82.0 82 48.8
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.5e-14 82.0 82 48.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.5e-14 82.0 201 30.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.5e-14 82.0 83 49.4
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.5e-14 82.0 83 49.4
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 7.1e-14 81.6 83 49.4
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 7.1e-14 81.6 163 34.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 9.3e-14 81.3 94 43.6
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 9.3e-14 81.3 94 43.6
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 9.3e-14 81.3 82 50.0
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.3e-14 81.3 186 33.3
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 9.3e-14 81.3 162 35.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.2e-13 80.9 73 52.1
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.2e-13 80.9 91 45.1
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-13 80.9 73 50.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-13 80.9 91 46.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.2e-13 80.9 162 34.6
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-13 80.5 108 41.7
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.6e-13 80.5 73 50.7
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.1e-13 80.1 86 51.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.1e-13 80.1 97 44.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.1e-13 80.1 67 58.2
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.1e-13 80.1 97 42.3
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.7e-13 79.7 73 50.7
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.7e-13 79.7 91 46.2
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 2.7e-13 79.7 127 37.8
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.5e-13 79.3 87 46.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.6e-13 79.0 72 51.4
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.6e-13 79.0 109 39.4
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 6.0e-13 78.6 156 31.4
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 6.0e-13 78.6 156 31.4
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.0e-13 78.6 70 51.4
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 6.0e-13 78.6 82 48.8
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.9e-13 78.2 81 48.1
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 7.9e-13 78.2 150 36.0
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 7.9e-13 78.2 70 50.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 7.9e-13 78.2 126 38.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.0e-12 77.8 132 36.4
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.0e-12 77.8 54 63.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.3e-12 77.4 154 33.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-12 77.4 193 30.1
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.3e-12 77.4 126 38.1
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.3e-12 77.4 160 33.1
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.8e-12 77.0 190 31.1
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.8e-12 77.0 190 31.1
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 2.3e-12 76.6 72 48.6
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.3e-12 76.6 128 38.3
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.0e-12 76.3 109 39.4
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.9e-12 75.9 180 32.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 3.9e-12 75.9 111 43.2
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 3.9e-12 75.9 90 46.7
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 6.7e-12 75.1 73 50.7
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 8.7e-12 74.7 190 31.1
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 1.1e-11 74.3 81 49.4
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.1e-11 74.3 114 36.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.1e-11 74.3 196 31.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-11 74.3 60 51.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.5e-11 73.9 95 44.2
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.9e-11 73.6 76 44.7
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.9e-11 73.6 120 34.2
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.5e-11 73.2 95 40.0
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.3e-11 72.8 97 41.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 3.3e-11 72.8 97 41.2
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 4.3e-11 72.4 119 36.1
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 9.6e-11 71.2 120 39.2
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.3e-10 70.9 177 29.4
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-10 70.5 68 47.1
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.6e-10 70.5 110 38.2
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.1e-10 70.1 145 32.4
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 3.7e-10 69.3 73 46.6
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.7e-10 69.3 120 37.5
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 3.7e-10 69.3 73 46.6
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 4.8e-10 68.9 120 34.2
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 4.8e-10 68.9 120 34.2
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 6.2e-10 68.6 73 47.9
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.1e-09 67.8 73 49.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-09 67.8 102 39.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.4e-09 67.4 73 46.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.8e-09 67.0 68 45.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.8e-09 67.0 68 45.6
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.8e-09 67.0 173 30.1
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 2.4e-09 66.6 99 37.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.4e-09 66.6 63 47.6
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.4e-09 66.6 60 50.0
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.1e-09 66.2 122 36.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 4.0e-09 65.9 74 48.6
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 6.9e-09 65.1 117 35.9
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.2e-08 64.3 60 48.3
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-08 63.9 89 44.9
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-08 63.9 54 59.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.0e-08 63.5 57 50.9
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.7e-07 60.5 59 45.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.2e-07 60.1 137 31.4
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.2e-07 60.1 185 27.6
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-07 60.1 55 50.9
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-07 58.2 90 35.6
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.9e-06 57.0 71 39.4
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.5e-06 56.6 59 47.5
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 9.3e-06 54.7 132 31.8


User provided reference genes

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