Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.6e-163 579.3 286 100.0
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 7.3e-108 394.4 281 70.8
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.4e-90 336.3 279 57.7
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 1.9e-87 326.6 280 57.5
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 2.1e-86 323.2 281 56.6
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 2.1e-86 323.2 281 55.9
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.1e-86 323.2 279 56.3
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 4.6e-86 322.0 283 56.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 7.8e-86 321.2 281 56.2
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.0e-85 320.9 282 56.7
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-85 320.5 282 57.1
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.3e-85 320.5 284 55.6
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.3e-85 319.7 279 56.6
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.3e-85 319.7 281 56.6
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.3e-85 319.7 281 56.6
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 5.1e-85 318.5 282 56.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 8.7e-85 317.8 282 56.4
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 8.7e-85 317.8 291 54.3
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 8.7e-85 317.8 280 56.1
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-84 317.0 281 56.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.9e-84 316.6 279 54.1
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.9e-84 316.6 278 56.1
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.9e-84 316.6 281 55.9
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.9e-84 316.6 281 54.8
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.9e-84 316.6 281 58.0
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.9e-84 316.6 281 54.8
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.9e-84 316.6 279 56.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 2.5e-84 316.2 281 57.3
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 2.5e-84 316.2 279 55.9
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 4.3e-84 315.5 281 55.5
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 7.3e-84 314.7 281 54.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 9.6e-84 314.3 281 56.6
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.3e-83 313.9 281 55.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 1.3e-83 313.9 281 54.8
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.6e-83 313.5 278 55.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 2.1e-83 313.2 281 56.2
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 3.6e-83 312.4 282 55.0
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.6e-83 312.4 283 54.1
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.6e-83 312.4 281 54.4
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 8.1e-83 311.2 279 54.8
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.1e-82 310.8 279 54.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.1e-82 310.8 281 54.4
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 1.1e-82 310.8 283 54.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.1e-82 310.8 279 55.9
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.8e-82 310.1 281 55.2
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.8e-82 310.1 281 54.4
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.4e-82 309.7 281 54.4
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.4e-82 309.7 279 55.2
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 3.1e-82 309.3 281 53.4
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 3.1e-82 309.3 279 55.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 3.1e-82 309.3 281 52.7
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 4.0e-82 308.9 279 56.3
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 5.3e-82 308.5 278 55.0
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.2e-81 307.4 298 52.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.2e-81 307.4 279 55.6
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.0e-81 306.6 279 54.8
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.0e-81 306.6 279 55.2
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.6e-81 306.2 280 55.7
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 2.6e-81 306.2 279 54.8
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.4e-81 305.8 281 54.4
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 5.8e-81 305.1 280 53.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 7.6e-81 304.7 281 54.8
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 7.6e-81 304.7 280 53.6
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 9.9e-81 304.3 281 54.1
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 2.2e-80 303.1 280 53.6
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.2e-80 303.1 281 53.7
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.8e-80 302.4 278 52.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 3.8e-80 302.4 281 54.4
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.4e-80 301.6 278 52.5
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.4e-80 301.6 277 56.0
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 6.4e-80 301.6 287 53.0
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 8.4e-80 301.2 269 55.8
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 8.4e-80 301.2 283 52.7
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.4e-79 300.4 281 54.1
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.9e-79 300.1 279 54.8
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 2.4e-79 299.7 281 53.7
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 3.2e-79 299.3 281 52.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 3.2e-79 299.3 280 53.9
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.4e-79 298.5 279 54.8
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 7.1e-79 298.1 281 54.4
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 2.7e-78 296.2 279 53.8
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 6.0e-78 295.0 265 54.3
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 7.9e-78 294.7 279 52.7
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.3e-77 293.1 284 51.8
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 8.7e-77 291.2 284 51.4
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 7.4e-76 288.1 268 51.9
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 2.8e-75 286.2 268 53.7
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 6.2e-75 285.0 311 48.2
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 5.3e-74 282.0 271 52.4
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 9.3e-71 271.2 244 54.5
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.2e-70 270.8 280 49.6
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 4.6e-70 268.9 363 43.3
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 6.0e-70 268.5 291 47.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.8e-69 266.9 257 51.0
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 6.7e-69 265.0 277 48.7
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.0e-66 255.8 307 45.9
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.3e-64 250.8 242 53.3
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 1.9e-63 246.9 248 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 2.5e-63 246.5 328 42.7
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.2e-62 244.2 246 50.8
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 2.1e-62 243.4 244 50.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.5e-60 237.3 278 46.0
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.4e-55 220.7 278 44.6
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 6.1e-54 215.3 281 44.5
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 3.0e-53 213.0 288 45.1
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.5e-52 210.7 274 41.2
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.6e-51 207.2 274 42.0
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.9e-38 161.8 251 41.0
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 8.8e-37 158.3 124 60.5
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 5.7e-36 155.6 108 63.0
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.7e-35 152.9 127 56.7
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.8e-35 152.5 376 30.9
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.4e-29 134.4 82 72.0
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.0e-29 132.9 162 45.1
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 9.1e-26 121.7 95 62.1
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.1e-18 98.2 83 60.2
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.1e-18 98.2 83 60.2
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.8e-18 97.4 58 74.1
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.0e-16 89.4 75 61.3
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 1.2e-12 78.2 85 51.8
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 4.9e-11 72.8 43 69.8
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 2.4e-10 70.5 93 40.9
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 3.5e-09 66.6 154 35.1
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 2.3e-08 63.9 67 44.8
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-07 61.6 49 53.1
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-07 61.6 49 53.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.1e-07 61.6 37 64.9
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.5e-07 61.2 49 53.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.3e-07 59.7 65 43.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 7.3e-07 58.9 98 37.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.6e-06 57.8 77 37.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.1e-06 57.4 81 38.3
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 4.7e-06 56.2 76 39.5
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 4.7e-06 56.2 81 37.0
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 4.7e-06 56.2 70 37.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 6.1e-06 55.8 79 36.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 6.1e-06 55.8 91 36.3
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 8.0e-06 55.5 75 37.3
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.0e-06 55.5 77 42.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 8.0e-06 55.5 76 44.7


User provided reference genes

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