Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 0.0e+00 1318.5 888 100.0
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 5.6e-300 1034.2 896 83.7
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 4.7e-246 855.1 548 91.8
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 5.2e-213 745.3 854 65.2
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 2.0e-212 743.4 895 61.9
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 7.8e-209 731.5 828 66.8
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 3.6e-206 722.6 903 64.6
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 6.2e-206 721.8 876 64.6
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 8.9e-205 718.0 841 63.7
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 1.5e-204 717.2 886 63.5
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 9.9e-204 714.5 882 64.6
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 2.4e-202 709.9 824 63.0
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 3.2e-202 709.5 867 62.2
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 1.6e-201 707.2 844 62.3
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 2.7e-201 706.4 898 61.0
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 2.7e-201 706.4 827 62.5
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 3.5e-201 706.1 907 64.5
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 3.0e-200 703.0 871 63.5
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 5.1e-200 702.2 870 60.9
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 6.6e-200 701.8 892 61.5
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 8.6e-200 701.4 869 60.6
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 3.3e-199 699.5 861 63.2
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 7.3e-199 698.4 887 58.9
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 1.2e-198 697.6 897 59.1
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 8.1e-198 694.9 878 61.2
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.1e-197 694.5 881 60.6
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 1.1e-197 694.5 883 61.3
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 1.4e-197 694.1 880 62.5
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 1.8e-197 693.7 832 62.3
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 2.4e-197 693.3 887 60.7
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 5.2e-197 692.2 871 62.5
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 6.9e-197 691.8 878 61.6
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 1.2e-196 691.0 895 59.4
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 9.9e-196 688.0 884 60.7
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.3e-195 687.6 872 60.9
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 2.2e-195 686.8 875 59.3
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 4.9e-195 685.6 757 65.8
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 6.4e-195 685.3 888 59.0
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 8.4e-195 684.9 887 58.9
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.9e-194 683.7 831 60.6
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 1.9e-194 683.7 881 62.4
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 2.4e-194 683.3 867 59.9
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 5.4e-194 682.2 879 58.6
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 7.1e-194 681.8 877 62.5
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 4.6e-193 679.1 898 63.6
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 7.8e-193 678.3 864 59.1
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 1.3e-192 677.6 866 61.7
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 3.0e-192 676.4 884 58.8
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 6.6e-192 675.2 932 57.0
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 8.7e-192 674.9 914 59.3
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 1.1e-191 674.5 830 60.6
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 1.1e-191 674.5 830 60.6
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 1.1e-191 674.5 886 58.2
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 4.3e-191 672.5 824 62.5
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 7.3e-191 671.8 860 61.6
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 9.6e-191 671.4 886 58.6
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 9.6e-191 671.4 870 59.2
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 1.6e-190 670.6 872 59.4
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.1e-190 670.2 890 50.1
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 2.8e-190 669.8 871 58.3
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 2.8e-190 669.8 849 64.9
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 4.8e-190 669.1 872 59.3
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 6.2e-190 668.7 830 60.0
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 8.1e-190 668.3 894 59.1
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 8.1e-190 668.3 887 58.5
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 5.3e-189 665.6 882 58.7
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 3.8e-187 659.4 872 61.5
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 4.9e-187 659.1 963 47.0
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 9.3e-186 654.8 869 64.0
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 3.0e-184 649.8 846 60.9
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 3.9e-184 649.4 862 45.5
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 5.1e-184 649.0 871 61.8
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 2.5e-183 646.7 865 63.5
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 2.5e-183 646.7 820 59.9
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 1.1e-181 641.3 886 61.9
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 1.1e-181 641.3 887 57.3
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 5.8e-180 635.6 888 57.3
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 5.8e-180 635.6 888 57.3
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 1.3e-179 634.4 844 45.6
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 3.8e-179 632.9 881 60.2
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 4.9e-179 632.5 849 63.0
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 2.4e-178 630.2 883 62.6
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 3.2e-178 629.8 900 54.0
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 1.2e-177 627.9 874 58.6
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.7e-177 626.7 874 59.3
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 4.6e-177 625.9 992 44.6
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 3.9e-176 622.9 914 58.8
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 5.1e-176 622.5 873 57.8
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 8.7e-176 621.7 826 59.0
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.1e-175 621.3 825 59.6
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 9.6e-175 618.2 825 57.2
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 1.1e-173 614.8 778 63.8
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 2.1e-169 600.5 878 55.7
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 1.3e-168 597.8 856 54.1
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 5.0e-163 579.3 882 60.3
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.1e-161 573.9 825 60.8
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 1.8e-160 570.9 660 63.3
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 1.9e-159 567.4 920 54.2
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 4.3e-159 566.2 722 63.2
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 1.4e-157 561.2 861 59.5
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 5.9e-156 555.8 662 62.7
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 1.3e-155 554.7 677 60.0
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 5.0e-155 552.7 556 61.7
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 4.7e-153 546.2 648 61.3
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 1.7e-147 527.7 548 56.9
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 3.0e-144 516.9 587 68.3
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 3.7e-142 510.0 831 54.4
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.4e-141 507.3 831 52.6
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 2.6e-135 487.3 566 65.5
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 1.7e-134 484.6 816 51.2
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 6.5e-131 472.6 821 54.0
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 3.5e-124 450.3 474 56.3
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 4.9e-110 403.3 553 43.4
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 2.9e-102 377.5 874 36.4
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 8.3e-102 375.9 471 49.3
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 2.0e-95 354.8 445 52.4
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 3.6e-81 307.4 989 36.1
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 1.4e-72 278.9 161 84.5
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 7.4e-66 256.5 331 74.0
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 2.8e-57 228.0 209 53.6
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 4.0e-56 224.2 327 40.4
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 3.2e-53 214.5 286 62.2
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 1.8e-51 208.8 207 55.6
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 6.7e-51 206.8 305 41.3
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 5.0e-46 190.7 895 36.0
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 7.2e-45 186.8 382 34.8
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.6e-44 184.5 195 49.7
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 5.9e-39 167.2 943 22.4
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 3.0e-35 154.8 683 34.8
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 2.0e-34 152.1 127 55.1
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 4.4e-34 151.0 396 29.0
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 7.4e-34 150.2 224 64.3
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 2.0e-31 142.1 117 58.1
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 5.0e-30 137.5 224 56.7
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.6e-28 131.3 103 59.2
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 2.0e-26 125.6 217 54.4
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.2e-23 116.3 112 51.8
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 4.5e-23 114.4 106 53.8
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 2.2e-22 112.1 110 54.5
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 6.5e-22 110.5 119 50.4
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 1.5e-21 109.4 94 56.4
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 6.8e-19 100.5 161 36.6
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 5.9e-15 87.4 53 73.6
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 3.2e-13 81.6 91 51.6
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 3.2e-13 81.6 60 63.3
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 1.2e-12 79.7 48 75.0
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 2.7e-12 78.6 92 52.2
MELO3C034796.2 Cucumis melo HOM05D009856 ORTHO05D168594 7.5e-10 70.5 68 50.0
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 3.7e-09 68.2 91 40.7
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 4.5e-07 61.2 257 24.9
Glyma.06G072200 Glycine max HOM05D000836 ORTHO05D000709 2.9e-06 58.5 333 23.4
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 5.0e-06 57.8 195 28.2
Gohir.A02G122100 Gossypium hirsutum HOM05D001315 ORTHO05D001618 8.6e-06 57.0 99 27.3


User provided reference genes

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