Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 6.8e-237 823.5 398 100.0
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.8e-198 695.3 401 86.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.8e-173 612.8 356 82.6
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 6.9e-173 610.9 355 82.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.5e-172 609.8 417 74.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 7.6e-172 607.4 351 82.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.7e-171 606.3 352 82.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.9e-171 605.5 349 82.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 3.8e-171 605.1 366 81.1
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 3.8e-171 605.1 401 74.6
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.8e-171 605.1 355 81.1
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 4.9e-171 604.7 354 81.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 6.4e-171 604.4 342 82.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 6.4e-171 604.4 353 80.5
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.4e-171 604.4 353 81.6
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 8.4e-171 604.0 354 81.1
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.1e-170 603.6 351 81.2
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.9e-170 602.8 353 81.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.9e-170 602.8 354 81.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.9e-170 602.8 356 81.7
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.5e-170 602.4 355 80.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.5e-170 602.4 397 76.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.5e-170 602.4 361 80.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.2e-170 602.1 371 78.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 3.2e-170 602.1 356 79.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.2e-170 601.7 371 78.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-170 601.3 353 81.6
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.5e-170 601.3 361 80.3
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.6e-169 599.7 361 78.9
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.7e-169 599.0 347 83.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.7e-169 599.0 354 80.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.5e-169 598.6 355 79.7
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 3.5e-169 598.6 362 79.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 4.6e-169 598.2 405 72.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 7.9e-169 597.4 408 73.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.0e-168 597.0 350 80.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-168 597.0 397 75.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.3e-168 596.7 405 73.1
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.3e-168 596.7 357 80.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.8e-168 596.3 362 78.2
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.3e-168 595.9 351 81.5
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.3e-168 595.9 382 75.1
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-168 595.5 350 80.0
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 3.0e-168 595.5 353 79.3
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.0e-168 595.5 356 80.1
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 3.0e-168 595.5 349 81.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.9e-168 595.1 355 80.8
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 5.1e-168 594.7 352 80.4
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 5.1e-168 594.7 354 81.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.1e-168 594.7 354 81.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 5.1e-168 594.7 355 79.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 6.7e-168 594.3 348 81.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 6.7e-168 594.3 347 81.8
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 8.7e-168 594.0 351 80.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 8.7e-168 594.0 361 79.8
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 8.7e-168 594.0 403 73.2
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.7e-168 594.0 372 78.5
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.1e-167 593.6 410 71.7
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.1e-167 593.6 356 78.7
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-167 593.6 355 80.3
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.1e-167 593.6 383 76.0
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.5e-167 593.2 351 81.2
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.5e-167 593.2 346 82.1
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.9e-167 592.8 399 74.7
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.3e-167 592.0 403 72.7
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 3.3e-167 592.0 410 72.7
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.3e-167 591.7 352 80.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 7.4e-167 590.9 354 79.1
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 7.4e-167 590.9 403 72.7
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 7.4e-167 590.9 354 79.1
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 9.6e-167 590.5 362 77.6
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-166 590.1 353 79.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.6e-166 589.7 345 81.7
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.6e-166 589.7 366 79.0
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-166 589.7 400 73.5
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 4.8e-166 588.2 354 78.5
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.8e-166 588.2 346 81.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.1e-165 587.0 344 81.7
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.4e-165 586.6 404 72.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.4e-165 586.6 356 79.2
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.9e-165 584.3 343 81.6
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.5e-164 583.2 354 78.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.5e-164 581.6 365 77.3
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 5.8e-164 581.3 351 77.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.6e-164 580.9 356 78.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.0e-163 580.5 360 78.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.0e-163 580.5 416 71.2
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.3e-163 580.1 411 71.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.2e-163 579.3 347 79.5
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 8.4e-163 577.4 349 79.7
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-162 576.2 346 79.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 4.6e-161 571.6 369 75.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 6.1e-161 571.2 380 73.9
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.1e-159 567.0 407 70.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.5e-159 566.6 376 73.7
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-159 565.8 310 85.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.7e-159 564.7 440 66.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 7.4e-159 564.3 310 84.8
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.3e-158 563.5 426 67.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.3e-158 561.2 318 82.4
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.1e-157 560.5 389 71.7
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.4e-157 559.3 330 80.0
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.3e-157 558.1 349 77.1
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 5.3e-157 558.1 386 73.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.6e-153 545.4 357 74.2
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.6e-153 545.0 330 79.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 6.1e-153 544.7 377 72.4
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.9e-153 544.3 326 81.0
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 5.1e-152 541.6 380 71.6
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.3e-151 538.5 366 72.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 5.0e-147 525.0 410 68.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.9e-146 523.1 349 70.5
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.5e-146 521.5 358 69.3
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.2e-146 521.2 360 69.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.1e-145 519.6 351 74.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.3e-144 516.2 399 65.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.7e-142 510.0 411 62.8
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.8e-141 506.5 505 55.0
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 7.0e-141 504.6 528 53.4
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.5e-138 496.1 557 49.9
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.2e-138 495.4 310 72.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 5.5e-138 495.0 252 94.4
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-131 473.8 250 84.4
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 7.2e-130 468.0 384 60.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.8e-128 463.4 283 77.7
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 5.0e-123 445.3 405 59.8
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.3e-120 436.4 348 60.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.1e-117 426.0 316 62.7
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-109 401.0 255 77.6
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.4e-101 372.1 212 80.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.0e-99 367.9 359 52.6
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 5.6e-98 362.1 362 53.3
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.2e-97 360.9 222 78.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-91 340.9 227 75.3
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.2e-89 334.3 294 54.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.9e-86 323.2 210 74.3
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-73 281.2 198 72.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.0e-68 262.3 329 41.6
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.1e-67 259.2 391 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 8.7e-67 258.5 325 42.8
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 7.3e-66 255.4 348 39.4
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 9.6e-66 255.0 395 40.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 5.3e-64 249.2 127 87.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.9e-61 240.7 316 39.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.3e-58 229.6 333 40.2
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 3.3e-50 203.4 247 40.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-49 201.4 187 59.9
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.2e-41 174.1 168 57.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.6e-39 167.2 123 70.7
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-23 114.8 100 63.0
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.0e-23 114.4 55 89.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.5e-23 113.6 156 45.5
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.7e-17 94.7 69 71.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 5.0e-14 83.2 49 73.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 4.2e-13 80.1 89 56.2
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.4e-11 75.1 33 90.9
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 7.5e-10 69.3 72 55.6
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.7e-09 68.2 34 79.4
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 6.3e-09 66.2 170 35.3


User provided reference genes

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