Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 5098.5 2610 100.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1875.5 2677 43.5
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1692.9 2678 40.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1681.8 2672 39.8
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1612.8 2656 39.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1602.8 2674 38.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1601.3 2445 41.6
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1600.9 2684 39.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1597.4 2670 38.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1577.8 2663 38.3
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1570.1 2704 37.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1562.0 2660 38.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1550.0 2691 38.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1547.3 2701 38.5
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1538.1 2669 37.2
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1534.6 2699 38.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1510.4 2648 37.3
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1493.0 2646 37.1
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1493.0 2643 37.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1489.2 2780 37.0
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1482.2 2668 36.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1473.8 2644 36.7
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1468.4 2643 37.0
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 2733 36.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1466.1 2652 36.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1458.4 2698 36.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1454.9 2673 36.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1451.8 2694 36.0
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1441.8 2699 36.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1439.9 2636 36.2
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1432.9 2652 37.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1430.6 2647 36.9
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1425.2 2666 36.8
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1407.1 2642 35.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1397.5 2648 35.5
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1392.9 2639 35.7
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1391.3 2652 35.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1387.9 2648 36.6
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1386.7 2659 35.4
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1384.4 2645 35.3
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1374.0 2668 36.2
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1368.2 2304 37.7
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1366.7 2650 35.7
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1366.3 2673 35.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1364.0 2711 35.2
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1362.8 2664 35.7
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1359.7 2645 35.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1358.6 2641 35.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1358.2 2671 35.8
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1355.9 2644 35.2
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1355.5 2651 35.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1346.6 2646 34.8
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1340.1 2643 35.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1332.4 2681 34.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1331.6 2611 35.4
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1328.5 2629 35.0
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1326.2 2658 35.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1320.4 2673 35.1
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1301.2 2652 34.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1299.3 2681 34.7
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1294.3 2592 35.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1278.8 2659 34.6
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1278.5 2341 36.3
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1270.4 2660 34.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1261.9 2580 33.9
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1256.1 2801 33.1
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1234.6 2689 34.1
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1231.9 2682 33.5
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1231.1 2632 34.3
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1216.1 2598 34.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1209.1 2625 32.9
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1206.8 2363 35.1
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1189.5 2672 33.6
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1173.3 2709 33.4
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1171.4 2677 33.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1155.6 2710 33.1
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1154.4 2632 32.8
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1127.5 2506 33.7
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1120.9 2190 35.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1101.3 2645 31.9
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1094.7 2623 32.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 7.1e-311 1072.0 1871 37.6
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 8.2e-307 1058.5 2582 32.3
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.5e-305 1054.3 2645 32.2
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 8.5e-296 1021.9 2637 31.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.6e-294 1017.7 2637 31.1
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 2.7e-294 1016.9 2091 33.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.4e-293 1014.6 2330 32.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 1.5e-284 984.6 2041 33.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 2.3e-277 960.7 2035 33.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 2.4e-274 950.7 2145 34.1
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.0e-268 931.0 2277 31.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.2e-252 878.6 2221 31.7
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-244 852.0 1753 34.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 7.1e-226 789.6 2530 29.0
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.4e-221 775.4 1144 42.8
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.0e-221 773.9 1812 33.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.0e-208 731.1 2774 26.2
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.6e-206 725.3 1754 30.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 6.3e-190 670.2 2737 25.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.6e-185 654.4 2562 27.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 8.2e-182 643.3 2604 26.2
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.7e-177 628.2 923 43.1
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.3e-176 625.2 757 46.6
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 4.4e-175 620.9 803 45.1
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 8.2e-174 616.7 2750 25.1
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.3e-147 529.6 799 41.8
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.7e-132 478.8 650 45.1
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 8.1e-129 467.2 601 45.4
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.1e-120 438.7 912 32.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.4e-119 434.9 1255 30.0
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 7.6e-119 434.1 342 66.7
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 3.9e-115 421.8 650 41.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.5e-114 419.9 756 35.8
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.7e-107 394.0 685 39.0
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.5e-93 349.4 543 42.0
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.1e-89 336.3 534 40.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.3e-86 327.0 377 50.4
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.7e-86 326.6 202 80.7
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.7e-82 311.6 1146 26.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.8e-81 308.5 913 30.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.6e-79 302.8 338 55.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.6e-79 302.8 338 55.6
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.1e-77 297.4 344 50.3
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 6.1e-76 291.6 688 32.4
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.7e-73 282.3 313 51.4
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.9e-70 272.7 497 37.4
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.7e-68 266.2 143 95.8
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.4e-66 258.8 480 34.8
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.7e-62 246.9 1051 25.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.6e-58 233.0 885 27.2
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 5.7e-50 205.3 202 54.5
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 5.5e-45 188.7 186 59.7
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.4e-42 179.1 320 35.3
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.8e-35 157.1 239 39.7
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.3e-35 156.8 184 46.2
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.9e-33 149.8 167 45.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 8.3e-33 148.3 334 32.3
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-31 142.5 524 26.9
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 3.1e-27 129.8 211 39.8
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.4e-26 125.9 309 30.4
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.0e-23 117.1 140 45.0
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.1e-19 103.2 122 42.6
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.5e-18 100.9 178 36.0
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 3.4e-18 99.8 240 31.7
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 4.4e-18 99.4 108 48.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 1.7e-17 97.4 340 27.4
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.1e-16 92.0 68 66.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.8e-15 88.6 242 30.2
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 3.9e-14 86.3 207 33.8
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.6e-12 80.9 586 20.5
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.2e-12 79.0 419 24.8
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.4e-11 77.8 72 51.4
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.4e-11 77.8 89 40.4
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 3.1e-11 76.6 322 26.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 9.9e-10 71.6 66 59.1
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 6.4e-09 68.9 67 56.7
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.4e-08 67.8 103 35.9
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 1.2e-07 64.7 64 43.8
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.6e-07 64.3 131 28.2
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-07 64.3 225 27.6
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-06 60.8 150 30.7


User provided reference genes

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