Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 4.0e-168 594.7 308 100.0
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 4.0e-88 328.9 251 69.7
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.3e-73 280.8 263 58.9
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.2e-73 280.0 263 58.2
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 3.7e-73 279.3 256 57.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 8.2e-73 278.1 253 56.5
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.1e-72 277.7 258 57.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.8e-72 276.9 232 60.8
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 2.4e-72 276.6 232 60.8
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 5.3e-72 275.4 275 53.8
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 6.9e-72 275.0 257 56.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 9.1e-72 274.6 253 57.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 9.1e-72 274.6 275 51.6
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-71 274.2 257 56.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.5e-71 273.9 243 58.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.5e-71 273.9 297 49.8
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.5e-71 273.9 272 54.4
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.6e-71 273.1 253 56.1
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.4e-71 272.7 265 55.5
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.5e-71 272.3 253 56.1
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 5.9e-71 271.9 247 57.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 5.9e-71 271.9 234 59.8
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 5.9e-71 271.9 240 59.2
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.8e-70 269.2 230 60.9
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 3.8e-70 269.2 277 54.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 5.0e-70 268.9 271 53.9
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 6.5e-70 268.5 238 58.8
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 6.5e-70 268.5 248 58.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 8.5e-70 268.1 250 55.6
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 1.4e-69 267.3 275 54.5
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.5e-69 266.5 256 53.9
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 3.2e-69 266.2 260 53.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 3.2e-69 266.2 255 55.3
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.2e-69 266.2 236 56.8
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.2e-69 265.8 256 55.5
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 5.5e-69 265.4 310 51.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 7.2e-69 265.0 280 53.2
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 7.2e-69 265.0 243 55.1
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 7.2e-69 265.0 282 50.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 7.2e-69 265.0 237 58.6
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 9.4e-69 264.6 325 48.3
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 9.4e-69 264.6 289 51.2
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 9.4e-69 264.6 298 51.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 1.2e-68 264.2 232 57.3
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-68 264.2 236 56.4
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-68 264.2 236 56.4
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.2e-68 264.2 273 51.6
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.2e-68 264.2 261 52.5
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.6e-68 263.8 289 50.5
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.1e-68 263.5 228 57.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.1e-68 263.5 227 57.7
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.1e-68 263.5 244 55.7
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.1e-68 263.5 279 52.3
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.7e-68 263.1 284 51.1
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.6e-68 262.7 233 59.7
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 3.6e-68 262.7 253 53.8
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 4.7e-68 262.3 282 51.8
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 6.1e-68 261.9 292 49.7
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 6.1e-68 261.9 279 52.7
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 7.9e-68 261.5 274 50.0
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 7.9e-68 261.5 243 56.8
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 7.9e-68 261.5 241 56.0
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.0e-67 261.2 294 49.0
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.4e-67 260.8 250 56.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.4e-67 260.8 224 58.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.8e-67 260.4 269 54.3
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-67 260.4 287 50.2
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.8e-67 260.4 287 51.9
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.3e-67 260.0 248 55.6
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.0e-67 259.6 236 55.9
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 5.1e-67 258.8 243 55.1
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.1e-67 258.8 272 51.5
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 6.7e-67 258.5 242 55.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.7e-67 258.5 226 57.1
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.5e-66 257.3 248 53.6
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.0e-66 256.9 243 55.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 2.0e-66 256.9 264 52.3
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.6e-66 256.5 239 55.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 4.4e-66 255.8 247 54.7
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 7.4e-66 255.0 241 55.6
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.4e-66 255.0 300 48.3
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.7e-65 253.8 237 55.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 2.2e-65 253.4 228 59.2
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.8e-65 253.1 236 55.1
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 3.7e-65 252.7 233 56.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 6.3e-65 251.9 219 57.5
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 6.3e-65 251.9 234 56.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-64 251.1 252 54.4
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.1e-64 251.1 281 50.2
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.4e-64 250.8 236 57.2
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 1.8e-64 250.4 259 54.1
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.1e-64 249.6 228 56.1
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.0e-64 248.4 222 59.0
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 3.8e-62 242.7 300 48.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.9e-61 240.4 243 52.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 7.2e-61 238.4 223 57.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 9.4e-61 238.0 282 47.9
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.7e-60 236.5 231 55.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.0e-59 234.6 216 57.4
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 8.8e-59 231.5 260 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.7e-57 227.3 271 46.5
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 9.1e-56 221.5 256 48.4
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-55 221.1 223 51.1
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 2.6e-55 219.9 223 50.7
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.5e-55 219.2 210 55.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.5e-53 212.2 253 45.8
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 7.2e-53 211.8 253 47.4
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.0e-51 206.5 256 44.9
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 5.2e-51 205.7 216 50.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-49 199.9 239 47.7
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 4.8e-49 199.1 225 48.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.4e-48 196.8 241 46.5
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.4e-48 196.8 241 46.5
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 4.1e-48 196.1 193 52.3
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 5.2e-43 179.1 197 52.3
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 3.4e-42 176.4 145 60.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 7.5e-42 175.3 148 57.4
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.7e-41 172.9 177 54.8
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.3e-38 164.5 152 55.9
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 4.0e-35 152.9 211 42.7
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.9e-33 146.0 168 48.2
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.1e-32 144.8 240 38.8
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.5e-26 124.4 292 35.3
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 3.2e-24 116.7 208 30.3
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.6e-21 105.9 86 57.0
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 8.0e-20 102.1 69 69.6
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-19 100.1 118 49.2
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.4e-17 92.4 187 35.3
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.7e-15 87.0 60 65.0
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-11 75.1 60 56.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 6.4e-09 65.9 85 44.7
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 8.3e-09 65.5 71 53.5
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 3.2e-08 63.5 97 41.2
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 5.4e-08 62.8 50 54.0
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.2e-07 61.6 44 65.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.6e-07 61.2 49 59.2
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.5e-07 60.1 50 52.0
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-06 58.2 62 50.0


User provided reference genes

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