Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1642.5 890 100.0
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1449.9 882 87.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1170.6 830 71.8
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1158.7 844 71.8
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1153.7 825 72.7
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1152.5 828 73.4
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1147.9 841 69.1
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1146.7 833 72.6
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1144.0 831 72.7
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1143.3 833 70.0
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1139.0 829 70.9
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1136.3 829 70.8
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1135.6 829 70.7
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1134.8 837 70.0
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1131.7 882 67.5
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1131.3 828 70.2
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1130.5 888 66.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1130.2 823 70.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1129.8 824 71.6
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1129.0 837 69.5
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1126.3 836 68.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1125.5 844 71.6
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1124.0 827 70.7
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1123.6 826 68.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1123.6 840 69.5
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1122.8 875 67.0
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1122.5 840 69.4
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1121.7 841 70.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1120.9 835 69.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1120.1 826 72.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1119.0 847 69.2
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1118.2 824 69.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1114.4 847 67.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1114.0 859 68.5
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1113.6 827 72.6
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1113.2 839 71.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1112.8 855 70.4
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1112.1 843 68.3
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1112.1 842 70.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1110.9 838 71.8
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1110.9 836 68.3
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1110.1 851 67.9
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1107.8 880 66.7
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1107.8 845 68.9
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1106.7 829 68.6
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1106.3 843 67.7
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1106.3 843 67.9
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1105.1 833 69.9
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1104.4 845 67.6
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1104.4 842 68.2
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1102.0 832 68.1
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1101.3 824 69.9
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1100.5 825 69.9
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1100.1 837 68.8
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1098.6 821 69.7
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1097.8 854 67.1
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1092.0 821 69.4
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1090.9 828 69.0
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1088.2 820 71.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1087.8 835 69.3
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1086.2 821 69.7
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1085.1 840 68.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1082.8 822 68.9
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1082.4 824 66.4
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1078.9 890 68.0
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1078.5 837 67.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 3.5e-310 1068.1 915 63.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.9e-308 1062.4 823 68.4
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 2.5e-308 1062.0 823 66.7
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 9.6e-308 1060.1 815 65.9
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 2.8e-307 1058.5 839 65.9
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 3.1e-306 1055.0 826 65.7
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 3.1e-306 1055.0 828 64.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 3.8e-304 1048.1 831 65.2
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 6.0e-302 1040.8 828 65.3
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 4.8e-299 1031.2 811 63.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 2.9e-296 1021.9 823 64.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 2.7e-294 1015.4 828 64.3
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 3.0e-293 1011.9 829 65.4
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 7.4e-292 1007.3 836 64.8
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 3.7e-291 1005.0 878 62.5
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 7.6e-289 997.3 841 64.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.0e-276 956.1 749 67.3
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.0e-276 956.1 749 67.3
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.0e-269 933.7 826 62.6
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 9.8e-252 874.0 834 56.7
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 7.5e-228 794.7 622 67.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 7.8e-225 784.6 818 53.5
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 5.1e-216 755.4 825 50.2
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 3.2e-210 736.1 496 72.2
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 6.0e-209 731.9 477 73.6
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.5e-207 726.5 557 67.7
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 8.1e-206 721.5 618 65.0
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 9.0e-189 664.8 822 47.9
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.7e-187 660.6 819 43.6
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 9.6e-183 644.8 513 69.2
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.6e-180 636.7 524 64.5
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.1e-169 599.0 484 66.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 4.1e-157 559.7 567 57.5
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 3.2e-146 523.5 825 38.2
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.2e-145 521.5 463 63.9
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 6.8e-136 489.2 413 63.7
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 6.8e-112 409.5 353 66.6
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.9e-91 340.5 202 78.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 8.1e-89 332.8 210 75.2
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.9e-86 323.6 209 77.0
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.4e-85 321.2 231 67.5
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.6e-79 301.2 196 75.5
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.4e-79 300.8 191 77.0
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.7e-78 298.5 304 61.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.8e-78 297.4 197 71.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.4e-77 294.7 198 71.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.1e-77 293.1 194 72.2
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 6.9e-72 276.6 190 68.9
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.7e-47 193.4 137 67.2
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 8.5e-46 189.9 144 65.3
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.7e-44 184.1 127 69.3
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.8e-43 179.9 113 72.6
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.4e-42 177.6 152 58.6
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.2e-41 175.3 109 75.2
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 2.2e-33 148.7 99 69.7
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.3e-30 139.4 91 71.4
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 8.5e-30 136.7 186 47.8
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.6e-28 132.5 77 76.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.5e-21 107.5 175 49.7
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-21 107.5 175 49.7
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.0e-18 99.0 81 63.0
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 4.4e-18 97.8 69 68.1
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.7e-15 88.6 167 37.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.8e-14 84.7 86 53.5
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.2e-13 81.3 52 75.0
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.8e-11 75.9 71 60.6
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.0e-11 75.1 61 55.7
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.0e-11 75.1 72 56.9
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 5.2e-11 74.3 53 62.3
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.6e-10 72.0 49 73.5
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.0e-06 60.1 248 25.4
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 2.3e-06 58.9 42 64.3
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.3e-06 58.9 49 59.2


User provided reference genes

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