Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 0.0e+00 1918.7 955 100.0
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1691.8 961 88.6
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1419.4 961 75.2
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1396.7 960 75.0
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1377.5 958 73.0
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1365.9 959 71.8
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1364.0 961 73.5
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1360.5 960 72.0
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1360.1 964 72.3
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1356.7 960 72.0
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1354.0 960 71.6
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1353.6 961 72.0
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1352.8 960 71.8
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1349.3 964 71.1
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1343.6 964 70.6
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1341.3 960 71.0
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1340.5 968 71.3
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1340.5 960 71.5
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1338.2 960 70.8
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1337.8 967 71.3
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1335.9 960 71.4
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1333.9 959 70.9
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1331.6 968 70.8
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1330.9 959 71.0
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1328.9 959 71.1
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1327.8 960 70.3
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1327.4 960 71.1
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1325.8 959 70.8
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1324.7 959 70.9
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1324.7 960 71.1
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1323.5 965 70.5
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1323.5 959 71.0
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1322.4 959 70.9
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1321.2 959 70.6
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1320.8 960 70.2
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1318.1 960 69.7
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1316.2 959 70.8
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1315.8 956 70.2
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1315.4 962 70.9
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1312.7 958 70.3
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1311.2 961 71.1
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1311.2 958 70.1
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1310.4 964 69.9
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1309.7 962 70.7
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1308.9 959 70.5
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1308.5 958 69.7
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1307.0 952 70.8
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1306.2 958 69.8
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1305.8 960 70.4
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1303.5 961 69.4
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1303.1 963 70.2
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1302.0 958 69.8
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1299.6 968 69.0
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1298.9 962 69.5
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1296.2 958 69.9
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1295.8 961 68.9
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1295.8 1036 66.4
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1295.0 975 69.3
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1294.3 960 69.2
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1293.1 960 68.9
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1292.7 961 69.1
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1292.3 964 69.5
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1291.9 960 68.2
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1291.9 960 69.1
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1291.6 977 68.9
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1290.0 961 68.3
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1289.2 954 68.8
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1287.3 960 68.1
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1286.2 961 68.7
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1285.8 959 68.0
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1285.4 975 67.9
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1285.4 959 69.0
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1285.4 961 68.3
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1282.3 959 68.3
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1276.2 958 68.0
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1269.6 959 68.7
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 0.0e+00 1266.1 963 66.8
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1264.2 961 67.4
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1264.2 1045 64.7
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1263.4 961 68.7
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1258.8 948 68.4
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1256.1 959 67.2
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1254.6 953 68.6
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1253.4 968 66.8
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1252.3 978 66.8
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1252.3 973 66.8
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1251.5 981 66.5
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1251.5 981 66.5
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1251.1 968 67.3
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1250.3 910 70.9
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1250.3 959 67.8
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1249.6 973 66.7
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1249.6 973 66.7
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1248.0 960 66.0
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1246.9 974 66.6
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1246.9 971 66.5
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1246.5 959 67.9
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1244.2 989 65.8
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1242.6 972 66.5
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1241.9 967 66.7
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1241.1 973 66.5
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1230.7 975 66.5
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1222.2 913 68.3
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1221.5 974 65.7
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1221.1 912 69.1
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1220.3 964 66.9
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1218.8 962 66.4
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 0.0e+00 1210.7 957 65.8
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 0.0e+00 1196.8 926 66.5
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1196.4 958 65.8
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1194.5 955 65.2
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1181.0 960 64.6
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1114.4 951 60.7
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 3.5e-300 1035.0 756 71.3
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 5.7e-298 1027.7 823 65.9
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 2.2e-273 946.0 961 53.7
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 6.5e-270 934.5 707 69.0
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 1.9e-269 932.9 723 67.5
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 2.5e-261 906.0 697 68.0
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 4.7e-260 901.7 960 54.8
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 6.1e-260 901.4 772 61.7
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 8.6e-238 827.8 966 48.9
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 7.5e-234 814.7 980 47.7
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 1.0e-198 698.0 762 51.7
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 8.2e-188 661.8 490 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 6.1e-183 645.6 828 45.4
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 1.6e-167 594.3 502 63.1
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 4.1e-139 500.0 413 61.3
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-129 468.4 482 53.7
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 3.4e-125 453.8 340 66.8
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 2.2e-124 451.1 356 65.2
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 1.3e-113 415.2 366 65.0
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 1.6e-95 355.1 237 72.2
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 6.2e-95 353.2 237 70.0
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 1.5e-93 348.6 1065 29.2
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 6.0e-90 336.7 232 68.5
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.8e-86 325.1 240 64.2
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 2.3e-81 308.1 301 58.8
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.1e-78 299.3 200 75.0
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 1.5e-64 252.3 177 65.5
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 1.9e-59 235.3 229 54.1
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 6.5e-52 210.3 347 39.5
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 1.8e-49 202.2 252 46.4
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 1.5e-48 199.1 356 36.2
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 5.0e-36 157.5 167 50.9
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 2.7e-34 151.8 155 52.3
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 1.8e-33 149.1 124 62.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 9.8e-32 143.3 121 61.2
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 1.8e-30 139.0 150 54.0
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 2.8e-26 125.2 123 59.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 5.7e-24 117.5 108 56.5
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.9e-19 102.4 57 80.7
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 5.6e-19 100.9 69 69.6
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.6e-18 99.4 153 39.9
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 7.5e-16 90.5 68 60.3
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 6.4e-15 87.4 68 58.8
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 1.1e-14 86.7 71 69.0
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 7.0e-14 84.0 54 68.5
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 1.2e-13 83.2 127 48.8
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 6.6e-12 77.4 71 62.0
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 8.6e-12 77.0 49 71.4
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.6e-08 65.5 80 46.2
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 5.8e-08 64.3 40 72.5
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 9.8e-08 63.5 60 63.3
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 9.8e-08 63.5 80 43.8


User provided reference genes

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