Gene: AT4G04920
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G04920
- Transcript Identifier AT4G04920.3
- Gene Type Coding gene
- Location Chr4 : 2497931-2504996 : positive
Gene Family Information
- ID HOM05D003523
- #Genes/#Species 194/95
- Phylogenetic origin
- ID ORTHO05D004493
- #Genes/#Species 179/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G04920.3
- symbol SFR6
- Alias AtSFR6,IEN1,INSENSITIVE TO EXOGENOUS NAD+ 1,MED16,MEDIATOR 16,YID1,YELLOW AND SENSITIVE TO IRON-DEFICIENCY 1
- full_name SENSITIVE TO FREEZING 6
- uniprot F4JGZ1
Descriptions
- Description sensitive to freezing 6
- Computational description SENSITIVE TO FREEZING 6 (SFR6); Has 159 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 5; Plants - 45; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1901672 | IMP | Gene Ontology | positive regulation of systemic acquired resistance | 1 |
| GO:0006355 | IMP IBA IEA | Gene Ontology | regulation of transcription, DNA-templated | 1 2 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:2001009 | IGI | Gene Ontology | regulation of plant-type cell wall cellulose biosynthetic process | 3 |
| GO:1902066 | IGI | Gene Ontology | regulation of cell wall pectin metabolic process | 3 |
| GO:0048364 | IGI | Gene Ontology | root development | 3 |
| GO:2001011 | IMP | Gene Ontology | positive regulation of plant-type cell wall cellulose biosynthetic process | 4 |
| GO:1905499 | IMP | Gene Ontology | trichome papilla formation | 4 |
| GO:0010091 | IMP | Gene Ontology | trichome branching | 4 |
| GO:2000022 | IMP | Gene Ontology | regulation of jasmonic acid mediated signaling pathway | 1 |
| GO:0010104 | IMP | Gene Ontology | regulation of ethylene-activated signaling pathway | 1 |
| GO:0048586 | IMP | Gene Ontology | regulation of long-day photoperiodism, flowering | 5 |
| GO:0032922 | IMP | Gene Ontology | circadian regulation of gene expression | 5 |
| GO:0006970 | IMP | Gene Ontology | response to osmotic stress | 6 |
| GO:0009631 | IMP | Gene Ontology | cold acclimation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016592 | IDA IEA | Gene Ontology | mediator complex | 7 |
| GO:0016592 | IEA | InterPro | mediator complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038836 | Mediator of RNA polymerase II transcription subunit 16 |
| Mapman id | Description |
|---|---|
| 15.3.4.4.3.6 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED16 |