Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 1.6e-238 828.9 404 100.0
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 8.9e-160 567.4 352 79.3
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.3e-131 473.0 403 60.0
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 1.2e-129 467.2 395 59.0
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 6.2e-129 464.9 384 59.9
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.1e-128 464.2 382 58.4
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 1.4e-128 463.8 384 60.2
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 3.1e-128 462.6 385 60.0
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 3.1e-128 462.6 384 59.9
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 4.0e-128 462.2 384 59.4
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 9.0e-128 461.1 384 59.6
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 1.2e-127 460.7 385 60.0
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.6e-127 459.5 393 58.5
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 4.4e-127 458.8 387 58.4
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 5.8e-127 458.4 384 58.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 7.6e-127 458.0 390 58.7
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 7.6e-127 458.0 384 58.3
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 1.7e-126 456.8 391 58.8
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 2.2e-126 456.4 381 59.1
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 3.8e-126 455.7 389 59.4
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 4.9e-126 455.3 393 59.8
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 4.9e-126 455.3 384 59.9
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.9e-125 453.4 388 59.3
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 2.4e-125 453.0 385 58.4
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.2e-125 452.6 385 59.2
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 4.2e-125 452.2 386 59.1
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 4.2e-125 452.2 385 59.7
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 5.4e-125 451.8 385 59.2
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 9.3e-125 451.1 386 58.8
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.1e-124 449.9 395 58.5
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.1e-124 449.9 382 59.2
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 2.1e-124 449.9 384 58.9
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 2.1e-124 449.9 387 58.7
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 2.1e-124 449.9 390 58.5
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 2.7e-124 449.5 397 58.2
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 3.5e-124 449.1 389 59.4
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 4.6e-124 448.7 395 58.2
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 4.6e-124 448.7 388 58.2
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.3e-123 447.2 386 58.5
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 1.3e-123 447.2 390 58.2
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 1.7e-123 446.8 392 57.4
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 1.7e-123 446.8 385 59.2
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 3.0e-123 446.0 390 57.7
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 3.9e-123 445.7 389 58.6
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 5.1e-123 445.3 389 57.6
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 6.6e-123 444.9 381 58.0
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 6.6e-123 444.9 385 57.7
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 6.6e-123 444.9 388 58.2
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 8.7e-123 444.5 387 58.7
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.5e-122 443.7 388 59.3
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.5e-122 443.7 390 57.2
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 2.5e-122 443.0 387 58.9
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.5e-122 443.0 384 58.6
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 4.3e-122 442.2 392 57.7
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 4.3e-122 442.2 391 57.0
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 5.6e-122 441.8 397 55.4
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.6e-122 441.8 390 57.4
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 7.3e-122 441.4 390 57.4
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 7.3e-122 441.4 389 57.1
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 9.6e-122 441.0 382 58.9
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 9.6e-122 441.0 389 57.3
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 1.3e-121 440.7 382 57.1
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 2.8e-121 439.5 388 57.5
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 2.8e-121 439.5 367 60.5
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.8e-120 436.8 425 54.1
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 3.1e-120 436.0 384 57.6
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 4.0e-120 435.6 376 56.4
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 5.3e-120 435.3 387 56.6
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 5.3e-120 435.3 380 58.2
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 6.9e-120 434.9 384 58.1
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 1.5e-119 433.7 390 56.4
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 1.5e-119 433.7 391 55.2
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 2.0e-119 433.3 387 58.1
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 3.4e-119 432.6 393 55.7
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.7e-118 430.3 388 57.0
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.8e-118 429.1 386 55.7
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 6.4e-118 428.3 383 55.4
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 6.4e-118 428.3 363 58.7
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 1.1e-117 427.6 387 55.6
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.4e-117 426.4 387 55.6
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 2.1e-116 423.3 387 55.8
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 4.3e-114 415.6 399 54.1
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 4.3e-114 415.6 364 58.0
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.8e-113 412.9 406 53.0
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.1e-112 411.0 402 53.5
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 2.4e-112 409.8 357 58.3
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 4.5e-111 405.6 376 54.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 7.6e-111 404.8 410 53.4
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 9.9e-111 404.4 382 55.8
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 4.9e-110 402.1 377 54.4
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 1.1e-109 401.0 380 54.7
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 4.2e-109 399.1 365 54.5
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 5.5e-109 398.7 385 53.8
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 2.1e-108 396.7 381 52.8
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.9e-106 390.2 358 55.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 3.7e-105 386.0 386 52.3
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 5.3e-104 382.1 382 51.0
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 9.0e-104 381.3 403 51.6
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.5e-100 369.4 287 63.8
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 4.6e-100 369.0 380 51.1
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.1e-98 364.4 389 51.2
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 5.3e-96 355.5 375 52.0
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 2.9e-94 349.7 363 49.6
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 5.5e-93 345.5 387 49.4
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 3.0e-91 339.7 243 65.0
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 8.2e-89 331.6 372 50.5
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 5.0e-86 322.4 348 49.7
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.1e-85 321.2 354 48.9
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 4.2e-85 319.3 397 47.1
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 5.0e-78 295.8 224 62.5
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.0e-74 283.9 354 45.5
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 1.3e-73 281.2 363 42.1
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.2e-61 239.6 147 74.8
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 2.2e-33 147.5 86 74.4
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 2.4e-32 144.1 443 30.7
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 7.3e-29 132.5 93 62.4
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 2.2e-25 120.9 129 50.4
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 2.1e-20 104.4 55 83.6
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 6.4e-17 92.8 54 79.6
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 5.6e-13 79.7 119 43.7
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.0e-11 73.6 85 49.4
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.3e-06 57.8 75 46.7


User provided reference genes

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