Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb019900 Zea mays HOM05D001707 ORTHO05D050027 7.7e-296 1020.0 619 100.0
Os03g0412900 Oryza sativa ssp. japonica HOM05D001707 ORTHO05D050027 3.3e-89 333.6 535 43.6
Zm00001eb219310 Zea mays HOM05D001707 ORTHO05D001694 4.4e-17 94.0 331 28.1
CSS0002645 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 7.8e-14 83.2 365 24.7
Lalb_Chr10g0107401 Lupinus albus HOM05D001707 ORTHO05D001694 1.3e-13 82.4 334 27.2
Os03g0596900 Oryza sativa ssp. japonica HOM05D001707 ORTHO05D001694 3.9e-13 80.9 321 26.8
HPP92_014029 Vanilla planifolia HOM05D001707 ORTHO05D001694 1.5e-12 79.0 377 24.9
HPP92_014024 Vanilla planifolia HOM05D001707 ORTHO05D001694 3.3e-12 77.8 367 27.5
PGR083G0672 Punica granatum HOM05D001707 ORTHO05D001694 1.2e-11 75.9 333 27.9
Nitab4.5_0005906g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.6e-11 75.5 363 24.0
FAN16G3081 Fragaria x ananassa HOM05D001707 ORTHO05D001694 2.1e-11 75.1 322 27.0
Pp3c14_4960 Physcomitrium patens HOM05D001707 ORTHO05D001694 2.1e-11 75.1 341 24.3
MSTRG.14484 Avicennia marina HOM05D001707 ORTHO05D001694 6.2e-11 73.6 345 25.8
MBI19_g14894_MAGBIO Magnolia biondii HOM05D001707 ORTHO05D001694 6.2e-11 73.6 343 23.9
Zm00001eb049840 Zea mays HOM05D001707 ORTHO05D001694 6.2e-11 73.6 326 25.5
PGSC0003DMG400022282 Solanum tuberosum HOM05D001707 ORTHO05D001694 8.0e-11 73.2 144 34.0
Solyc07g065490.3 Solanum lycopersicum HOM05D001707 ORTHO05D001694 1.1e-10 72.8 144 34.0
Sopen07g033700 Solanum pennellii HOM05D001707 ORTHO05D001694 1.1e-10 72.8 144 34.0
Sc16g0008030 Simmondsia chinensis HOM05D001707 ORTHO05D001694 1.8e-10 72.0 122 40.2
RcHm_v2.0_Chr5g0053741 Rosa chinensis HOM05D001707 ORTHO05D001694 3.1e-10 71.2 129 34.9
MELO3C014102.2 Cucumis melo HOM05D001707 ORTHO05D001694 4.0e-10 70.9 359 23.4
PSO675G8484 Papaver somniferum HOM05D001707 ORTHO05D001694 4.0e-10 70.9 105 39.0
Duzib205G0120 Durio zibethinus HOM05D001707 ORTHO05D001694 5.2e-10 70.5 363 23.4
Rhsim04G0012800 Rhododendron simsii HOM05D001707 ORTHO05D001694 6.8e-10 70.1 105 37.1
CsaV3_3G004070 Cucumis sativus L. HOM05D001707 ORTHO05D001694 8.9e-10 69.7 117 38.5
Lalb_Chr04g0247871 Lupinus albus HOM05D001707 ORTHO05D001694 8.9e-10 69.7 315 25.1
Eucgr.F02052 Eucalyptus grandis HOM05D001707 ORTHO05D001694 1.2e-09 69.3 115 35.7
QL08p004228 Quercus lobata HOM05D001707 ORTHO05D001694 1.2e-09 69.3 337 25.5
Actinidia35400 Actinidia chinensis HOM05D001707 ORTHO05D001694 1.5e-09 68.9 116 34.5
Dinv40853 Davidia involucrata HOM05D001707 ORTHO05D001694 2.0e-09 68.6 108 38.9
FAN25G3697 Fragaria x ananassa HOM05D001707 ORTHO05D001694 2.0e-09 68.6 116 37.1
Glyma.08G329100 Glycine max HOM05D001707 ORTHO05D001694 2.0e-09 68.6 357 23.8
Zm00001eb364070 Zea mays HOM05D001707 ORTHO05D001694 2.0e-09 68.6 360 24.2
Oeu014356.1 Olea europaea HOM05D001707 ORTHO05D001694 2.6e-09 68.2 323 25.1
Actinidia05012 Actinidia chinensis HOM05D001707 ORTHO05D001694 3.4e-09 67.8 360 23.1
Aqoxy1G04255 Aquilegia oxysepala HOM05D001707 ORTHO05D001694 3.4e-09 67.8 374 23.3
AT5G63550 Arabidopsis thaliana HOM05D001707 ORTHO05D001694 3.4e-09 67.8 307 26.4
CARHR277410 Cardamine hirsuta HOM05D001707 ORTHO05D001694 3.4e-09 67.8 302 24.2
Glyma.06G167700 Glycine max HOM05D001707 ORTHO05D001694 3.4e-09 67.8 351 24.8
Prupe.4G242600 Prunus persica HOM05D001707 ORTHO05D001694 3.4e-09 67.8 80 42.5
Oeu041438.3 Olea europaea HOM05D001707 ORTHO05D001694 4.4e-09 67.4 335 23.9
BolC8t50000H Brassica oleracea HOM05D001707 ORTHO05D001694 5.8e-09 67.0 291 25.4
Lj1g0012650 Lotus japonicus HOM05D001707 ORTHO05D001694 5.8e-09 67.0 350 22.3
Aqoxy4G02337 Aquilegia oxysepala HOM05D001707 ORTHO05D001694 7.5e-09 66.6 337 24.0
A09p08340 Brassica napus HOM05D001707 ORTHO05D001694 7.5e-09 66.6 304 25.0
BraA09t36483Z Brassica rapa HOM05D001707 ORTHO05D001694 7.5e-09 66.6 304 25.0
AUR62017093 Chenopodium quinoa HOM05D001707 ORTHO05D001694 7.5e-09 66.6 321 27.1
Gohir.D05G383400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 9.8e-09 66.2 80 43.8
Gorai.009G450100 Gossypium raimondii HOM05D001707 ORTHO05D001694 9.8e-09 66.2 80 43.8
Nn1g03185 Nelumbo nucifera HOM05D001707 ORTHO05D001694 9.8e-09 66.2 68 48.5
CiPaw.12G137800 Carya illinoinensis HOM05D001707 ORTHO05D001694 1.3e-08 65.9 147 34.7
Sed0006520 Sechium edule HOM05D001707 ORTHO05D001694 1.3e-08 65.9 120 39.2
VMungo0540G1466 Vigna mungo HOM05D001707 ORTHO05D001694 1.3e-08 65.9 331 25.4
CAN.G492.36 Capsicum annuum HOM05D001707 ORTHO05D001694 1.7e-08 65.5 349 28.1
Oeu005962.1 Olea europaea HOM05D001707 ORTHO05D001694 1.7e-08 65.5 364 22.3
TWI38G0208 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 1.7e-08 65.5 363 23.1
Manes.15G060500 Manihot esculenta HOM05D001707 ORTHO05D001694 2.2e-08 65.1 121 35.5
Lalb_Chr15g0082041 Lupinus albus HOM05D001707 ORTHO05D001694 2.9e-08 64.7 336 24.1
Manes.03G140900 Manihot esculenta HOM05D001707 ORTHO05D001694 2.9e-08 64.7 363 22.0
CSS0006292 Camellia sinensis var. sinensis HOM05D001707 ORTHO05D001694 3.7e-08 64.3 132 35.6
PSO541G1067 Papaver somniferum HOM05D001707 ORTHO05D001694 3.7e-08 64.3 348 23.6
BcaC07g39351 Brassica carinata HOM05D001707 ORTHO05D001694 4.9e-08 63.9 291 24.4
CiPaw.11G203300 Carya illinoinensis HOM05D001707 ORTHO05D001694 4.9e-08 63.9 364 23.1
Ciclev10007691m.g Citrus clementina HOM05D001707 ORTHO05D001694 4.9e-08 63.9 122 35.2
HanXRQChr05g0159891 Helianthus annuus HOM05D001707 ORTHO05D001694 4.9e-08 63.9 110 40.9
MD11G1200600 Malus domestica HOM05D001707 ORTHO05D001694 4.9e-08 63.9 356 25.0
Nitab4.5_0000461g0250 Nicotiana tabacum HOM05D001707 ORTHO05D001694 4.9e-08 63.9 84 41.7
Peaxi162Scf01164g00129 Petunia axillaris HOM05D001707 ORTHO05D001694 4.9e-08 63.9 74 45.9
Ca_06393_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 6.4e-08 63.5 371 23.7
HanXRQChr03g0074051 Helianthus annuus HOM05D001707 ORTHO05D001694 6.4e-08 63.5 124 33.1
Hma1.2p1_1559F.1_g290640 Hydrangea macrophylla HOM05D001707 ORTHO05D001694 6.4e-08 63.5 149 31.5
Nitab4.5_0006508g0020 Nicotiana tabacum HOM05D001707 ORTHO05D001694 6.4e-08 63.5 84 41.7
TWI39G1172 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 6.4e-08 63.5 333 22.5
Atru.chr2.3683 Acer truncatum HOM05D001707 ORTHO05D001694 8.3e-08 63.2 119 37.0
Cfa020198 Carpinus fangiana HOM05D001707 ORTHO05D001694 8.3e-08 63.2 291 24.7
Gohir.D12G193400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 8.3e-08 63.2 383 23.8
Actinidia37156 Actinidia chinensis HOM05D001707 ORTHO05D001694 1.1e-07 62.8 292 26.0
Gohir.A04G006100 Gossypium hirsutum HOM05D001707 ORTHO05D001694 1.1e-07 62.8 123 36.6
THA.LOC104813447 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 1.1e-07 62.8 394 23.4
FvH4_3g29362 Fragaria vesca HOM05D001707 ORTHO05D001694 1.4e-07 62.4 120 35.8
FAN11G4026 Fragaria x ananassa HOM05D001707 ORTHO05D001694 1.4e-07 62.4 120 35.8
Ca_16062_v3 Cicer arietinum L. HOM05D001707 ORTHO05D001694 1.9e-07 62.0 345 21.4
MD03G1183500 Malus domestica HOM05D001707 ORTHO05D001694 1.9e-07 62.0 95 36.8
TWI38G1767 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 1.9e-07 62.0 362 25.1
Haze_09817 Corylus avellana HOM05D001707 ORTHO05D001694 2.4e-07 61.6 111 36.0
Medtr5g095720 Medicago truncatula HOM05D001707 ORTHO05D001694 2.4e-07 61.6 360 21.7
Phvul.006G056900 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 2.4e-07 61.6 103 39.8
Duzib268G1664 Durio zibethinus HOM05D001707 ORTHO05D001694 3.2e-07 61.2 94 39.4
Migut.H01758 Erythranthe guttata HOM05D001707 ORTHO05D001694 3.2e-07 61.2 351 24.2
Lalb_Chr11g0069391 Lupinus albus HOM05D001707 ORTHO05D001694 3.2e-07 61.2 360 20.6
Phvul.006G056800 Phaseolus vulgaris HOM05D001707 ORTHO05D001694 3.2e-07 61.2 351 22.5
Cpa.g.sc12.152 Carica papaya HOM05D001707 ORTHO05D001694 4.1e-07 60.8 69 46.4
CDE05G1523 Ceratophyllum demersum HOM05D001707 ORTHO05D001694 4.1e-07 60.8 188 31.4
FAN21G0111 Fragaria x ananassa HOM05D001707 ORTHO05D001694 4.1e-07 60.8 166 28.3
BcaB04g19925 Brassica carinata HOM05D001707 ORTHO05D001694 7.0e-07 60.1 315 23.8
Duzib170G0335 Durio zibethinus HOM05D001707 ORTHO05D001694 7.0e-07 60.1 79 43.0
TAR626G0122 Trochodendron aralioides HOM05D001707 ORTHO05D001694 7.0e-07 60.1 352 21.3
DCAR_013228 Daucus carota HOM05D001707 ORTHO05D001694 9.2e-07 59.7 337 25.8
Potri.011G093200 Populus trichocarpa HOM05D001707 ORTHO05D001694 9.2e-07 59.7 98 40.8
ATR0827G138 Amborella trichopoda HOM05D001707 ORTHO05D001694 1.2e-06 59.3 353 20.7
BcaC07g38239 Brassica carinata HOM05D000997 ORTHO05D000828 1.2e-06 59.3 82 42.7
CAN.G337.4 Capsicum annuum HOM05D001707 ORTHO05D001694 1.2e-06 59.3 324 25.9
Sabra16G0240600 Salix brachista HOM05D001707 ORTHO05D001694 1.2e-06 59.3 122 36.9
Glyma.08G329200 Glycine max HOM05D001707 ORTHO05D001694 1.6e-06 58.9 94 39.4
SEGI_09311 Sequoiadendron giganteum HOM05D001707 ORTHO05D001694 1.6e-06 58.9 399 21.6
GSVIVG01014672001 Vitis vinifera HOM05D001707 ORTHO05D001694 1.6e-06 58.9 67 46.3
MBI16_g47138_MAGBIO Magnolia biondii HOM05D001707 ORTHO05D001694 2.1e-06 58.5 111 32.4
SalBow5G1728 Salvia bowleyana HOM05D001707 ORTHO05D001694 2.1e-06 58.5 356 21.6
Thecc.07G014600 Theobroma cacao HOM05D001707 ORTHO05D001694 2.1e-06 58.5 134 34.3
vmacro19138 Vaccinium macrocarpon HOM05D001707 ORTHO05D001694 2.1e-06 58.5 100 36.0
PGSC0003DMG401014410 Solanum tuberosum HOM05D001707 ORTHO05D001694 2.7e-06 58.2 289 23.2
Lsat_1_v5_gn_9_90080 Lactuca sativa HOM05D001707 ORTHO05D001694 3.5e-06 57.8 62 50.0
Manes.06G122400 Manihot esculenta HOM05D001707 ORTHO05D001694 3.5e-06 57.8 364 21.2
Potri.001G367400 Populus trichocarpa HOM05D001707 ORTHO05D001694 3.5e-06 57.8 84 40.5
HPP92_000339 Vanilla planifolia HOM05D001707 ORTHO05D001694 3.5e-06 57.8 372 23.7
VMungo0540G1473 Vigna mungo HOM05D001707 ORTHO05D001694 3.5e-06 57.8 97 36.1
Aa31LG5G12000 Aethionema arabicum HOM05D001707 ORTHO05D001694 4.6e-06 57.4 282 27.3
MSTRG.13020 Avicennia marina HOM05D001707 ORTHO05D001694 4.6e-06 57.4 344 24.1
Carub.0007s1424 Capsella rubella HOM05D001707 ORTHO05D001694 4.6e-06 57.4 62 48.4
PSO675G5971 Papaver somniferum HOM05D001707 ORTHO05D001694 4.6e-06 57.4 89 37.1
THA.LOC104817704 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 4.6e-06 57.4 63 47.6
Aqoxy3G01661 Aquilegia oxysepala HOM05D001707 ORTHO05D001694 6.0e-06 57.0 386 21.8
AT5G55660 Arabidopsis thaliana HOM05D001707 ORTHO05D001694 6.0e-06 57.0 100 39.0
MBI16_g46682_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D001694 6.0e-06 57.0 107 31.8
Psat2g007560 Pisum sativum HOM05D001707 ORTHO05D001694 6.0e-06 57.0 64 46.9
BraA08t34031Z Brassica rapa HOM05D000997 ORTHO05D000828 7.8e-06 56.6 101 38.6
Glyma.18G077700 Glycine max HOM05D001707 ORTHO05D001694 7.8e-06 56.6 360 24.7
Oeu005486.1 Olea europaea HOM05D001707 ORTHO05D001694 7.8e-06 56.6 82 36.6


User provided reference genes

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